Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26465

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
5,915,116	+		PFLU_RS26455	0.42	-1.7
5,915,116	+		PFLU_RS26455	0.42	-0.5
5,915,117	-		PFLU_RS26455	0.42	+0.6
5,915,117	-		PFLU_RS26455	0.42	-0.6
5,915,117	-		PFLU_RS26455	0.42	-0.1
5,915,171	+		PFLU_RS26455	0.51	-2.5
5,915,171	+		PFLU_RS26455	0.51	+0.2
5,915,172	-		PFLU_RS26455	0.51	+1.3
5,915,172	-		PFLU_RS26455	0.51	+0.7
5,915,172	-		PFLU_RS26455	0.51	+0.1
5,915,427	+				+1.3
5,915,428	-				-0.0
5,915,428	-				+0.7
5,915,428	-				-0.3
5,915,459	-				+0.6
5,915,459	-				+0.2
5,915,460	+				-0.6
5,915,460	+				-0.7
5,915,460	+				-0.3
5,915,460	+				-0.7
5,915,460	+				+1.3
5,915,460	+				-0.4
5,915,460	+				+0.2
5,915,460	+				+0.6
5,915,460	+				-1.3
5,915,460	+				-0.6
5,915,460	+				+0.1
5,915,460	+				-0.8
5,915,460	+				+0.4
5,915,460	+				-0.9
5,915,460	+				-2.0
5,915,461	-				-0.1
5,915,461	-				+0.7
5,915,461	-				-0.8
5,915,461	-				-0.3
5,915,461	-				-1.5
5,915,461	-				-0.6
5,915,461	-				+1.7
5,915,461	-				+0.4
5,915,461	-				-0.0
5,915,461	-				-0.3
5,915,461	-				-0.7
5,915,461	-				-1.8
5,915,461	-				+0.8
5,915,461	-				+0.8
5,915,461	-				+0.6
5,915,461	-				+0.0
5,915,461	-				+0.9
5,915,461	-				+1.6
5,915,488	+				-0.1
5,915,489	-				+0.5
5,915,496	+				+0.3
5,915,496	+				-0.6
5,915,496	+				+0.2
5,915,496	+				-1.0
5,915,496	+				-0.3
5,915,497	-				+1.1
5,915,497	-				+0.5
5,915,499	+				+1.2
5,915,499	+				-2.6
5,915,499	+				-0.3
5,915,499	+				-0.1
5,915,500	-				-1.3
5,915,500	-				+0.5
5,915,514	+				-0.1
5,915,514	+				+1.5
5,915,514	+				-0.5
5,915,515	-				+0.7
5,915,515	-				-1.6
5,915,515	-				+0.5
5,915,515	-				+0.9
5,915,515	-				+1.0
5,915,515	-				+1.3
5,915,547	+				+0.1
5,915,547	+				-2.0
5,915,548	-				+0.9
5,915,564	+		PFLU_RS26460	0.11	+1.1
5,915,598	+		PFLU_RS26460	0.18	+0.1
5,915,598	+		PFLU_RS26460	0.18	+0.1
5,915,599	-		PFLU_RS26460	0.18	+0.1
5,915,623	+		PFLU_RS26460	0.23	+0.5
5,915,623	+		PFLU_RS26460	0.23	+0.0
5,915,623	+		PFLU_RS26460	0.23	+0.2
5,915,624	-		PFLU_RS26460	0.23	-1.3
5,915,624	-		PFLU_RS26460	0.23	-2.3
5,915,624	-		PFLU_RS26460	0.23	+1.6
5,915,624	-		PFLU_RS26460	0.23	+0.8
5,915,624	-		PFLU_RS26460	0.23	-0.9
5,915,624	-		PFLU_RS26460	0.23	-1.2
5,915,624	-		PFLU_RS26460	0.23	-0.1
5,915,769	+		PFLU_RS26460	0.54	-0.5
5,915,769	+		PFLU_RS26460	0.54	-0.4
5,915,769	+		PFLU_RS26460	0.54	-0.1
5,915,769	+		PFLU_RS26460	0.54	+0.0
5,915,769	+		PFLU_RS26460	0.54	+1.0
5,915,769	+		PFLU_RS26460	0.54	+1.2
5,915,769	+		PFLU_RS26460	0.54	+1.0
5,915,769	+		PFLU_RS26460	0.54	+0.6
5,915,769	+		PFLU_RS26460	0.54	+1.0
5,915,769	+		PFLU_RS26460	0.54	+0.5
5,915,769	+		PFLU_RS26460	0.54	-0.3
5,915,770	-		PFLU_RS26460	0.54	-0.1
5,915,770	-		PFLU_RS26460	0.54	+0.4
5,915,770	-		PFLU_RS26460	0.54	-0.3
5,915,770	-		PFLU_RS26460	0.54	-1.7
5,915,770	-		PFLU_RS26460	0.54	-1.0
5,915,770	-		PFLU_RS26460	0.54	+1.3
5,915,770	-		PFLU_RS26460	0.54	+0.9
5,915,770	-		PFLU_RS26460	0.54	-1.0
5,915,783	+		PFLU_RS26460	0.57	+3.1
5,915,784	-		PFLU_RS26460	0.57	-0.2
5,915,784	-		PFLU_RS26460	0.57	-1.0
5,915,788	+		PFLU_RS26460	0.58	+0.5
5,915,789	-		PFLU_RS26460	0.58	+1.1
5,915,853	+		PFLU_RS26460	0.71	-0.8
5,915,853	+		PFLU_RS26460	0.71	-1.2
5,915,853	+		PFLU_RS26460	0.71	+0.9
5,915,853	+		PFLU_RS26460	0.71	+0.0
5,915,853	+		PFLU_RS26460	0.71	+1.0
5,915,853	+		PFLU_RS26460	0.71	+0.0
5,915,853	+		PFLU_RS26460	0.71	-0.3
5,915,854	-		PFLU_RS26460	0.71	-1.7
5,915,854	-		PFLU_RS26460	0.71	+1.6
5,915,854	-		PFLU_RS26460	0.71	-0.9
5,915,859	+		PFLU_RS26460	0.73	+0.9
5,915,859	+		PFLU_RS26460	0.73	+0.3
5,915,859	+		PFLU_RS26460	0.73	-0.3
5,915,859	+		PFLU_RS26460	0.73	+1.0
5,915,860	-		PFLU_RS26460	0.73	+0.4
5,915,860	-		PFLU_RS26460	0.73	-1.0
5,915,860	-		PFLU_RS26460	0.73	-0.3
5,915,860	-		PFLU_RS26460	0.73	-1.1
5,915,860	-		PFLU_RS26460	0.73	+0.3
5,915,860	-		PFLU_RS26460	0.73	-2.5
5,915,860	-		PFLU_RS26460	0.73	+1.1
5,915,860	-		PFLU_RS26460	0.73	+0.6
5,915,860	-		PFLU_RS26460	0.73	-0.3
5,915,860	-		PFLU_RS26460	0.73	+1.6
5,915,890	+		PFLU_RS26460	0.79	+2.3
5,915,890	+		PFLU_RS26460	0.79	+0.3
5,915,891	-		PFLU_RS26460	0.79	+0.8
5,915,910	+		PFLU_RS26460	0.83	-2.4
5,915,910	+		PFLU_RS26460	0.83	-0.7
5,915,910	+		PFLU_RS26460	0.83	-0.7
5,915,928	+		PFLU_RS26460	0.87	+1.3
5,915,928	+		PFLU_RS26460	0.87	+0.3
5,915,929	-		PFLU_RS26460	0.87	+0.1
5,915,929	-		PFLU_RS26460	0.87	+1.2
5,915,929	-		PFLU_RS26460	0.87	+0.4
5,915,929	-		PFLU_RS26460	0.87	-0.4
5,915,946	+				+1.3
5,915,946	+				-3.1
5,915,946	+				+0.7
5,915,946	+				+0.1
5,915,946	+				-0.6
5,915,946	+				+0.4
5,915,946	+				-0.4
5,915,946	+				+0.1
5,915,946	+				-0.7
5,915,946	+				-1.8
5,915,946	+				-2.7
5,915,946	+				+0.5
5,915,947	-				+0.3
5,915,947	-				+1.6
5,915,947	-				-0.1
5,915,947	-				+0.3
5,915,947	-				+0.9
5,915,947	-				+0.1
5,915,947	-				+0.2
5,915,947	-				+0.7
5,915,947	-				+0.4
5,915,947	-				-0.2
5,915,947	-				-1.8
5,915,947	-				-0.2
5,915,947	-				-1.1
5,915,947	-				+0.0
5,915,949	+				+0.5
5,915,949	+				+1.0
5,915,949	+				-0.2
5,915,949	+				-0.6
5,915,950	-				-1.5
5,915,950	-				-0.9
5,915,950	-				-0.7
5,915,950	-				-2.1
5,915,950	-				+1.0
5,915,950	-				+1.3
5,916,038	+				+0.2
5,916,039	-				+1.8
5,916,039	-				-0.7
5,916,039	-				+0.6
5,916,154	-				-1.4
5,916,154	-				+1.3
5,916,325	+		PFLU_RS26465	0.29	-0.3
5,916,325	+		PFLU_RS26465	0.29	-0.1
5,916,325	+		PFLU_RS26465	0.29	-0.3
5,916,325	+		PFLU_RS26465	0.29	-0.1
5,916,325	+		PFLU_RS26465	0.29	+1.5
5,916,325	+		PFLU_RS26465	0.29	+0.4
5,916,325	+		PFLU_RS26465	0.29	-0.6
5,916,326	-		PFLU_RS26465	0.29	-0.8
5,916,326	-		PFLU_RS26465	0.29	+0.7
5,916,436	-		PFLU_RS26465	0.44	-0.7
5,916,604	+		PFLU_RS26465	0.67	+0.0
5,916,605	-		PFLU_RS26465	0.67	-0.5
5,916,605	-		PFLU_RS26465	0.67	+0.8
5,916,605	-		PFLU_RS26465	0.67	-0.3
5,916,714	+		PFLU_RS26465	0.81	-0.4
5,916,714	+		PFLU_RS26465	0.81	-0.7
5,916,714	+		PFLU_RS26465	0.81	-0.5
5,916,714	+		PFLU_RS26465	0.81	-1.0
5,916,714	+		PFLU_RS26465	0.81	-1.3
5,916,714	+		PFLU_RS26465	0.81	-1.0
5,916,714	+		PFLU_RS26465	0.81	-1.5
5,916,714	+		PFLU_RS26465	0.81	-0.6
5,916,714	+		PFLU_RS26465	0.81	-1.7
5,916,714	+		PFLU_RS26465	0.81	-1.4
5,916,714	+		PFLU_RS26465	0.81	-0.2
5,916,714	+		PFLU_RS26465	0.81	-0.3
5,916,714	+		PFLU_RS26465	0.81	-0.6
5,916,714	+		PFLU_RS26465	0.81	+3.9
5,916,714	+		PFLU_RS26465	0.81	+0.9
5,916,714	+		PFLU_RS26465	0.81	-0.4
5,916,714	+		PFLU_RS26465	0.81	+0.0
5,916,714	+		PFLU_RS26465	0.81	+0.3
5,916,714	+		PFLU_RS26465	0.81	+0.3
5,916,714	+		PFLU_RS26465	0.81	+1.3
5,916,714	+		PFLU_RS26465	0.81	-1.5
5,916,714	+		PFLU_RS26465	0.81	-0.3
5,916,714	+		PFLU_RS26465	0.81	+1.0
5,916,714	+		PFLU_RS26465	0.81	+0.3
5,916,715	-		PFLU_RS26465	0.81	-2.1
5,916,715	-		PFLU_RS26465	0.81	+0.2
5,916,715	-		PFLU_RS26465	0.81	+0.2
5,916,715	-		PFLU_RS26465	0.81	+0.2
5,916,715	-		PFLU_RS26465	0.81	+1.0
5,916,715	-		PFLU_RS26465	0.81	-0.4
5,916,715	-		PFLU_RS26465	0.81	+0.7
5,916,715	-		PFLU_RS26465	0.81	+0.4
5,916,715	-		PFLU_RS26465	0.81	+0.7
5,916,715	-		PFLU_RS26465	0.81	+2.9
5,916,715	-		PFLU_RS26465	0.81	-2.5
5,916,715	-		PFLU_RS26465	0.81	+0.0
5,916,715	-		PFLU_RS26465	0.81	-0.5
5,916,715	-		PFLU_RS26465	0.81	-0.5
5,916,715	-		PFLU_RS26465	0.81	+1.0
5,916,715	-		PFLU_RS26465	0.81	-0.3
5,916,715	-		PFLU_RS26465	0.81	+1.5
5,916,715	-		PFLU_RS26465	0.81	-1.9
5,916,715	-		PFLU_RS26465	0.81	-1.5
5,916,715	-		PFLU_RS26465	0.81	+1.2
5,916,715	-		PFLU_RS26465	0.81	-1.8
5,916,715	-		PFLU_RS26465	0.81	+0.6
5,916,715	-		PFLU_RS26465	0.81	+1.3
5,916,715	-		PFLU_RS26465	0.81	+1.3
5,916,715	-		PFLU_RS26465	0.81	-1.0
5,916,715	-		PFLU_RS26465	0.81	-1.3
5,916,715	-		PFLU_RS26465	0.81	+0.5
5,916,715	-		PFLU_RS26465	0.81	+0.0
5,916,717	+		PFLU_RS26465	0.82	+0.9
5,916,718	-		PFLU_RS26465	0.82	+1.1
5,916,718	-		PFLU_RS26465	0.82	+1.7
5,916,865	+				-0.3
5,916,865	+				+0.2
5,916,865	+				+0.3
5,916,865	+				-0.5
5,916,866	-				+1.0
5,916,866	-				+0.0
5,916,877	-				-0.5
5,916,897	+				-0.3
5,916,898	-				-1.9
5,916,898	-				+0.6
5,916,913	+				+0.2
5,916,913	+				-0.6
5,916,913	+				-2.3
5,916,913	+				-1.3
5,916,913	+				-2.4
5,916,913	+				-1.7
5,916,913	+				+1.2
5,916,913	+				-0.5
5,916,913	+				+0.3
5,916,914	-				-0.8
5,916,914	-				+0.7
5,916,914	-				+0.3
5,916,914	-				+0.3
5,916,914	-				+1.5
5,916,914	-				-0.7
5,916,914	-				+1.3
5,916,914	-				+0.4
5,916,914	-				-1.1
5,916,914	-				+0.6
5,916,914	-				-1.0
5,916,917	+				+0.5
5,916,917	+				+1.3
5,916,917	+				-0.4
5,916,918	-				+1.3
5,916,918	-				-0.4
5,916,928	+				+2.1
5,916,928	+				-2.1
5,916,950	+				-1.3
5,916,950	+				-0.7
5,916,951	-				+1.3
5,916,951	-				+0.6
5,916,951	-				-2.5
5,916,951	-				+0.5
5,916,961	+				+1.3
5,916,961	+				+0.8
5,916,961	+				-1.6
5,916,962	-				-0.7
5,916,962	-				-1.1
5,916,962	-				-0.7
5,916,962	-				-0.4
5,917,046	+				-1.6
5,917,046	+				+1.3
5,917,046	+				-0.8
5,917,046	+				-0.3
5,917,046	+				+0.0
5,917,046	+				+1.9
5,917,046	+				+0.6
5,917,046	+				+0.3
5,917,046	+				-0.9
5,917,046	+				-0.5
5,917,046	+				+0.4
5,917,046	+				+0.3
5,917,047	-				-0.0
5,917,047	-				+0.6
5,917,047	-				+1.0
5,917,047	-				-3.0
5,917,047	-				+0.7
5,917,047	-				-0.0
5,917,047	-				-1.0
5,917,047	-				+1.1
5,917,047	-				-0.1
5,917,047	-				-0.4
5,917,216	+		PFLU_RS26470	0.28	+1.0
5,917,216	+		PFLU_RS26470	0.28	-1.7
5,917,217	-		PFLU_RS26470	0.28	-1.3
5,917,217	-		PFLU_RS26470	0.28	-1.3
5,917,217	-		PFLU_RS26470	0.28	-0.3
5,917,217	-		PFLU_RS26470	0.28	+0.0
5,917,217	-		PFLU_RS26470	0.28	-1.6
5,917,275	+		PFLU_RS26470	0.37	-0.8
5,917,281	+		PFLU_RS26470	0.38	+0.4
5,917,281	+		PFLU_RS26470	0.38	+1.6
5,917,281	+		PFLU_RS26470	0.38	-1.7
5,917,281	+		PFLU_RS26470	0.38	+0.5
5,917,281	+		PFLU_RS26470	0.38	+0.7
5,917,281	+		PFLU_RS26470	0.38	-1.8
5,917,281	+		PFLU_RS26470	0.38	+0.7
5,917,281	+		PFLU_RS26470	0.38	+0.0
5,917,281	+		PFLU_RS26470	0.38	-1.7
5,917,281	+		PFLU_RS26470	0.38	+0.1
5,917,281	+		PFLU_RS26470	0.38	-0.8
5,917,281	+		PFLU_RS26470	0.38	-0.8
5,917,281	+		PFLU_RS26470	0.38	+1.0
5,917,281	+		PFLU_RS26470	0.38	+0.4
5,917,281	+		PFLU_RS26470	0.38	-1.4
5,917,281	+		PFLU_RS26470	0.38	-2.3
5,917,281	+		PFLU_RS26470	0.38	+0.3
5,917,281	+		PFLU_RS26470	0.38	+0.4
5,917,281	+		PFLU_RS26470	0.38	-2.0
5,917,281	+		PFLU_RS26470	0.38	+1.0
5,917,281	+		PFLU_RS26470	0.38	-1.1
5,917,281	+		PFLU_RS26470	0.38	+0.2
5,917,281	+		PFLU_RS26470	0.38	+0.9
5,917,281	+		PFLU_RS26470	0.38	-0.1
5,917,281	+		PFLU_RS26470	0.38	-2.9
5,917,281	+		PFLU_RS26470	0.38	+1.0
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