Experiment: Choline chloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS22295 and PFLU_RS22300 are separated by 52 nucleotides PFLU_RS22300 and PFLU_RS22305 are separated by 78 nucleotides PFLU_RS22305 and PFLU_RS22310 are separated by 73 nucleotides
PFLU_RS22295: PFLU_RS22295 - methyl-accepting chemotaxis protein, at 5,015,024 to 5,016,649
_RS22295
PFLU_RS22300: PFLU_RS22300 - EamA family transporter, at 5,016,702 to 5,017,601
_RS22300
PFLU_RS22305: PFLU_RS22305 - CPBP family intramembrane metalloprotease, at 5,017,680 to 5,018,471
_RS22305
PFLU_RS22310: PFLU_RS22310 - methyl-accepting chemotaxis protein, at 5,018,545 to 5,020,110
_RS22310
Position (kb) 5016
5017
5018 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5016.035 kb on + strand, within PFLU_RS22295 at 5016.036 kb on - strand, within PFLU_RS22295 at 5016.036 kb on - strand, within PFLU_RS22295 at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.647 kb on + strand at 5016.648 kb on - strand at 5016.648 kb on - strand at 5016.688 kb on + strand at 5016.689 kb on - strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.723 kb on + strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.724 kb on - strand at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.945 kb on + strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.946 kb on - strand, within PFLU_RS22300 at 5016.978 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.018 kb on + strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.019 kb on - strand, within PFLU_RS22300 at 5017.183 kb on - strand, within PFLU_RS22300 at 5017.183 kb on - strand, within PFLU_RS22300 at 5017.303 kb on - strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.395 kb on + strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.396 kb on - strand, within PFLU_RS22300 at 5017.404 kb on + strand, within PFLU_RS22300 at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.527 kb on + strand at 5017.528 kb on - strand at 5017.537 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.567 kb on + strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.568 kb on - strand at 5017.646 kb on + strand at 5017.646 kb on + strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.647 kb on - strand at 5017.648 kb on + strand at 5017.648 kb on + strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.649 kb on - strand at 5017.701 kb on + strand at 5017.701 kb on + strand at 5017.701 kb on + strand at 5017.702 kb on - strand at 5017.702 kb on - strand at 5017.726 kb on - strand at 5017.743 kb on + strand at 5017.743 kb on + strand at 5017.744 kb on - strand at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.820 kb on + strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.821 kb on - strand, within PFLU_RS22305 at 5017.856 kb on + strand, within PFLU_RS22305 at 5017.857 kb on - strand, within PFLU_RS22305 at 5017.861 kb on + strand, within PFLU_RS22305 at 5017.862 kb on - strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.902 kb on + strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.903 kb on - strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.962 kb on + strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5017.963 kb on - strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.179 kb on + strand, within PFLU_RS22305 at 5018.180 kb on - strand, within PFLU_RS22305 at 5018.180 kb on - strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.217 kb on + strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.218 kb on - strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.221 kb on + strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.222 kb on - strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.259 kb on + strand, within PFLU_RS22305 at 5018.260 kb on - strand, within PFLU_RS22305 at 5018.364 kb on + strand, within PFLU_RS22305 at 5018.365 kb on - strand, within PFLU_RS22305 at 5018.447 kb on + strand at 5018.447 kb on + strand at 5018.448 kb on - strand at 5018.448 kb on - strand at 5018.448 kb on - strand at 5018.452 kb on - strand at 5018.484 kb on + strand at 5018.484 kb on + strand at 5018.485 kb on - strand at 5018.485 kb on - strand at 5018.489 kb on + strand at 5018.550 kb on + strand at 5018.551 kb on - strand at 5018.554 kb on - strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.580 kb on + strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand at 5018.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C) remove 5,016,035 + PFLU_RS22295 0.62 -1.1 5,016,036 - PFLU_RS22295 0.62 +0.1 5,016,036 - PFLU_RS22295 0.62 +0.2 5,016,647 + -0.0 5,016,647 + +0.4 5,016,647 + +0.4 5,016,647 + +1.9 5,016,648 - +1.0 5,016,648 - +0.7 5,016,688 + +0.7 5,016,689 - +2.0 5,016,723 + -3.3 5,016,723 + -2.3 5,016,723 + +0.6 5,016,723 + -0.4 5,016,723 + +0.8 5,016,723 + -0.5 5,016,723 + -1.2 5,016,723 + +0.6 5,016,723 + -0.2 5,016,723 + -0.5 5,016,724 - +0.4 5,016,724 - -1.4 5,016,724 - -2.0 5,016,724 - +0.4 5,016,724 - -1.3 5,016,724 - -1.0 5,016,724 - -0.6 5,016,724 - -1.8 5,016,724 - -1.5 5,016,724 - -1.9 5,016,724 - +0.3 5,016,724 - +0.5 5,016,724 - -2.2 5,016,724 - +0.2 5,016,724 - +0.7 5,016,945 + PFLU_RS22300 0.27 -1.6 5,016,945 + PFLU_RS22300 0.27 -1.0 5,016,945 + PFLU_RS22300 0.27 +0.3 5,016,945 + PFLU_RS22300 0.27 +0.3 5,016,945 + PFLU_RS22300 0.27 +0.6 5,016,945 + PFLU_RS22300 0.27 +0.7 5,016,945 + PFLU_RS22300 0.27 +0.7 5,016,945 + PFLU_RS22300 0.27 +1.2 5,016,945 + PFLU_RS22300 0.27 +0.8 5,016,946 - PFLU_RS22300 0.27 +0.4 5,016,946 - PFLU_RS22300 0.27 -0.2 5,016,946 - PFLU_RS22300 0.27 +0.2 5,016,946 - PFLU_RS22300 0.27 -0.9 5,016,946 - PFLU_RS22300 0.27 -1.1 5,016,946 - PFLU_RS22300 0.27 -0.2 5,016,946 - PFLU_RS22300 0.27 +0.6 5,016,946 - PFLU_RS22300 0.27 +0.1 5,016,978 + PFLU_RS22300 0.31 -0.3 5,017,018 + PFLU_RS22300 0.35 -1.3 5,017,018 + PFLU_RS22300 0.35 -0.3 5,017,018 + PFLU_RS22300 0.35 -2.9 5,017,019 - PFLU_RS22300 0.35 +1.0 5,017,019 - PFLU_RS22300 0.35 -1.0 5,017,019 - PFLU_RS22300 0.35 -2.5 5,017,019 - PFLU_RS22300 0.35 +0.7 5,017,183 - PFLU_RS22300 0.53 +0.2 5,017,183 - PFLU_RS22300 0.53 +1.5 5,017,303 - PFLU_RS22300 0.67 +0.5 5,017,395 + PFLU_RS22300 0.77 +0.2 5,017,395 + PFLU_RS22300 0.77 +0.6 5,017,395 + PFLU_RS22300 0.77 -0.5 5,017,395 + PFLU_RS22300 0.77 +0.5 5,017,395 + PFLU_RS22300 0.77 +0.2 5,017,395 + PFLU_RS22300 0.77 -0.5 5,017,395 + PFLU_RS22300 0.77 +2.0 5,017,395 + PFLU_RS22300 0.77 +0.2 5,017,395 + PFLU_RS22300 0.77 -0.3 5,017,396 - PFLU_RS22300 0.77 -0.6 5,017,396 - PFLU_RS22300 0.77 +0.2 5,017,396 - PFLU_RS22300 0.77 -0.4 5,017,396 - PFLU_RS22300 0.77 +0.8 5,017,396 - PFLU_RS22300 0.77 +0.2 5,017,404 + PFLU_RS22300 0.78 -0.9 5,017,527 + +0.9 5,017,527 + +0.0 5,017,527 + +0.4 5,017,527 + -0.7 5,017,528 - -0.3 5,017,537 + -0.3 5,017,567 + -0.5 5,017,567 + +1.0 5,017,567 + +1.5 5,017,567 + +0.3 5,017,567 + +1.6 5,017,567 + +1.0 5,017,567 + +0.2 5,017,567 + -0.7 5,017,568 - -0.0 5,017,568 - -0.3 5,017,568 - +1.2 5,017,568 - +1.3 5,017,568 - +0.4 5,017,568 - +0.5 5,017,568 - +0.9 5,017,646 + +0.5 5,017,646 + -0.5 5,017,647 - +0.2 5,017,647 - +0.5 5,017,647 - -0.4 5,017,647 - -0.5 5,017,647 - +1.3 5,017,647 - -2.3 5,017,648 + +1.8 5,017,648 + -1.9 5,017,649 - +0.1 5,017,649 - +1.0 5,017,649 - -0.1 5,017,649 - +1.2 5,017,649 - +0.0 5,017,649 - -1.2 5,017,649 - +1.5 5,017,649 - -0.2 5,017,649 - -1.9 5,017,701 + -0.2 5,017,701 + -1.8 5,017,701 + -0.3 5,017,702 - +0.4 5,017,702 - -0.3 5,017,726 - +0.2 5,017,743 + +0.3 5,017,743 + +0.2 5,017,744 - -0.6 5,017,820 + PFLU_RS22305 0.18 +0.3 5,017,820 + PFLU_RS22305 0.18 +1.0 5,017,820 + PFLU_RS22305 0.18 -1.7 5,017,820 + PFLU_RS22305 0.18 -2.5 5,017,820 + PFLU_RS22305 0.18 +0.5 5,017,820 + PFLU_RS22305 0.18 -1.3 5,017,820 + PFLU_RS22305 0.18 -0.3 5,017,820 + PFLU_RS22305 0.18 +0.7 5,017,821 - PFLU_RS22305 0.18 +0.5 5,017,821 - PFLU_RS22305 0.18 +0.4 5,017,821 - PFLU_RS22305 0.18 +0.2 5,017,821 - PFLU_RS22305 0.18 -3.0 5,017,821 - PFLU_RS22305 0.18 +1.5 5,017,856 + PFLU_RS22305 0.22 +0.3 5,017,857 - PFLU_RS22305 0.22 -0.5 5,017,861 + PFLU_RS22305 0.23 +1.5 5,017,862 - PFLU_RS22305 0.23 -0.4 5,017,902 + PFLU_RS22305 0.28 +0.0 5,017,902 + PFLU_RS22305 0.28 +0.6 5,017,902 + PFLU_RS22305 0.28 +1.2 5,017,902 + PFLU_RS22305 0.28 -1.0 5,017,903 - PFLU_RS22305 0.28 -0.5 5,017,903 - PFLU_RS22305 0.28 +0.0 5,017,903 - PFLU_RS22305 0.28 -1.5 5,017,962 + PFLU_RS22305 0.36 +0.7 5,017,962 + PFLU_RS22305 0.36 -0.5 5,017,962 + PFLU_RS22305 0.36 +0.3 5,017,963 - PFLU_RS22305 0.36 -0.6 5,017,963 - PFLU_RS22305 0.36 -0.5 5,017,963 - PFLU_RS22305 0.36 +0.7 5,017,963 - PFLU_RS22305 0.36 +1.0 5,018,179 + PFLU_RS22305 0.63 +1.4 5,018,179 + PFLU_RS22305 0.63 -2.4 5,018,179 + PFLU_RS22305 0.63 -0.8 5,018,179 + PFLU_RS22305 0.63 +0.4 5,018,179 + PFLU_RS22305 0.63 -0.4 5,018,180 - PFLU_RS22305 0.63 +1.2 5,018,180 - PFLU_RS22305 0.63 +0.0 5,018,217 + PFLU_RS22305 0.68 -0.5 5,018,217 + PFLU_RS22305 0.68 +0.7 5,018,217 + PFLU_RS22305 0.68 +1.0 5,018,217 + PFLU_RS22305 0.68 -1.0 5,018,217 + PFLU_RS22305 0.68 +0.5 5,018,218 - PFLU_RS22305 0.68 +0.8 5,018,218 - PFLU_RS22305 0.68 -0.8 5,018,218 - PFLU_RS22305 0.68 +0.1 5,018,221 + PFLU_RS22305 0.68 -2.4 5,018,221 + PFLU_RS22305 0.68 -1.5 5,018,221 + PFLU_RS22305 0.68 +0.7 5,018,221 + PFLU_RS22305 0.68 -0.3 5,018,221 + PFLU_RS22305 0.68 -0.0 5,018,221 + PFLU_RS22305 0.68 -1.9 5,018,221 + PFLU_RS22305 0.68 -1.0 5,018,221 + PFLU_RS22305 0.68 +0.0 5,018,221 + PFLU_RS22305 0.68 +0.8 5,018,221 + PFLU_RS22305 0.68 -1.5 5,018,221 + PFLU_RS22305 0.68 -0.6 5,018,221 + PFLU_RS22305 0.68 -2.8 5,018,222 - PFLU_RS22305 0.68 -0.5 5,018,222 - PFLU_RS22305 0.68 +0.6 5,018,222 - PFLU_RS22305 0.68 +0.6 5,018,222 - PFLU_RS22305 0.68 +0.7 5,018,222 - PFLU_RS22305 0.68 -1.4 5,018,222 - PFLU_RS22305 0.68 +0.7 5,018,222 - PFLU_RS22305 0.68 +0.2 5,018,222 - PFLU_RS22305 0.68 -0.7 5,018,222 - PFLU_RS22305 0.68 +0.2 5,018,222 - PFLU_RS22305 0.68 +0.3 5,018,222 - PFLU_RS22305 0.68 +1.5 5,018,222 - PFLU_RS22305 0.68 +0.3 5,018,222 - PFLU_RS22305 0.68 -0.3 5,018,222 - PFLU_RS22305 0.68 +1.2 5,018,259 + PFLU_RS22305 0.73 -0.8 5,018,259 + PFLU_RS22305 0.73 +0.5 5,018,259 + PFLU_RS22305 0.73 +0.9 5,018,260 - PFLU_RS22305 0.73 -0.9 5,018,364 + PFLU_RS22305 0.86 +1.6 5,018,365 - PFLU_RS22305 0.86 +1.5 5,018,447 + +0.3 5,018,447 + +2.6 5,018,448 - +0.1 5,018,448 - +1.8 5,018,448 - -2.7 5,018,452 - +0.1 5,018,484 + -1.7 5,018,484 + +1.0 5,018,485 - +0.8 5,018,485 - -1.5 5,018,489 + +0.7 5,018,550 + -1.5 5,018,551 - -0.4 5,018,554 - -1.3 5,018,580 + -2.1 5,018,580 + -2.0 5,018,580 + -1.7 5,018,580 + -3.4 5,018,581 - -2.3 5,018,581 - -3.0 5,018,581 - -1.0 5,018,581 - -1.3
Or see this region's nucleotide sequence