Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04455

Experiment: Choline chloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS04445 and PFLU_RS04450 overlap by 4 nucleotidesPFLU_RS04450 and PFLU_RS04455 are separated by 114 nucleotidesPFLU_RS04455 and PFLU_RS04460 are separated by 23 nucleotides PFLU_RS04445: PFLU_RS04445 - ABC transporter substrate-binding protein, at 998,755 to 999,402 _RS04445 PFLU_RS04450: PFLU_RS04450 - STAS domain-containing protein, at 999,399 to 999,704 _RS04450 PFLU_RS04455: PFLU_RS04455 - BolA family transcriptional regulator, at 999,819 to 1,000,058 _RS04455 PFLU_RS04460: PFLU_RS04460 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,000,082 to 1,001,347 _RS04460 Position (kb) 999 1000 1001Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 998.896 kb on + strand, within PFLU_RS04445at 998.896 kb on + strand, within PFLU_RS04445at 998.896 kb on + strand, within PFLU_RS04445at 998.897 kb on - strand, within PFLU_RS04445at 998.920 kb on + strand, within PFLU_RS04445at 998.920 kb on + strand, within PFLU_RS04445at 998.920 kb on + strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.921 kb on - strand, within PFLU_RS04445at 998.934 kb on + strand, within PFLU_RS04445at 998.934 kb on + strand, within PFLU_RS04445at 998.934 kb on + strand, within PFLU_RS04445at 998.935 kb on - strand, within PFLU_RS04445at 998.935 kb on - strand, within PFLU_RS04445at 998.982 kb on + strand, within PFLU_RS04445at 998.982 kb on + strand, within PFLU_RS04445at 998.983 kb on - strand, within PFLU_RS04445at 998.995 kb on + strand, within PFLU_RS04445at 998.995 kb on + strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 998.996 kb on - strand, within PFLU_RS04445at 999.068 kb on - strand, within PFLU_RS04445at 999.068 kb on - strand, within PFLU_RS04445at 999.088 kb on + strand, within PFLU_RS04445at 999.088 kb on + strand, within PFLU_RS04445at 999.088 kb on + strand, within PFLU_RS04445at 999.088 kb on + strand, within PFLU_RS04445at 999.088 kb on + strand, within PFLU_RS04445at 999.089 kb on - strand, within PFLU_RS04445at 999.089 kb on - strand, within PFLU_RS04445at 999.106 kb on - strand, within PFLU_RS04445at 999.197 kb on - strand, within PFLU_RS04445at 999.197 kb on - strand, within PFLU_RS04445at 999.197 kb on - strand, within PFLU_RS04445at 999.197 kb on - strand, within PFLU_RS04445at 999.235 kb on - strand, within PFLU_RS04445at 999.375 kb on + strandat 999.574 kb on + strand, within PFLU_RS04450at 999.702 kb on + strandat 999.702 kb on + strandat 999.703 kb on - strandat 999.703 kb on - strandat 999.703 kb on - strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.705 kb on + strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.706 kb on - strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.712 kb on + strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.713 kb on - strandat 999.715 kb on + strandat 999.715 kb on + strandat 999.716 kb on - strandat 999.716 kb on - strandat 999.716 kb on - strandat 999.742 kb on + strandat 999.743 kb on - strandat 999.743 kb on - strandat 999.743 kb on - strandat 999.743 kb on - strandat 999.774 kb on + strandat 999.774 kb on + strandat 999.774 kb on + strandat 999.829 kb on + strandat 999.829 kb on + strandat 999.836 kb on + strandat 999.836 kb on + strandat 999.836 kb on + strandat 999.874 kb on + strand, within PFLU_RS04455at 999.874 kb on + strand, within PFLU_RS04455at 999.874 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 999.966 kb on + strand, within PFLU_RS04455at 1000.016 kb on + strand, within PFLU_RS04455

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C)
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998,896 + PFLU_RS04445 0.22 -1.4
998,896 + PFLU_RS04445 0.22 +0.0
998,896 + PFLU_RS04445 0.22 -2.0
998,897 - PFLU_RS04445 0.22 -0.4
998,920 + PFLU_RS04445 0.25 +1.2
998,920 + PFLU_RS04445 0.25 +2.5
998,920 + PFLU_RS04445 0.25 -0.4
998,921 - PFLU_RS04445 0.26 +0.8
998,921 - PFLU_RS04445 0.26 +0.2
998,921 - PFLU_RS04445 0.26 +0.2
998,921 - PFLU_RS04445 0.26 -1.4
998,921 - PFLU_RS04445 0.26 +1.2
998,921 - PFLU_RS04445 0.26 -1.8
998,934 + PFLU_RS04445 0.28 +1.8
998,934 + PFLU_RS04445 0.28 -1.6
998,934 + PFLU_RS04445 0.28 +0.8
998,935 - PFLU_RS04445 0.28 +1.9
998,935 - PFLU_RS04445 0.28 -0.8
998,982 + PFLU_RS04445 0.35 -0.1
998,982 + PFLU_RS04445 0.35 -2.0
998,983 - PFLU_RS04445 0.35 +0.2
998,995 + PFLU_RS04445 0.37 -1.8
998,995 + PFLU_RS04445 0.37 -1.1
998,996 - PFLU_RS04445 0.37 -0.5
998,996 - PFLU_RS04445 0.37 +0.9
998,996 - PFLU_RS04445 0.37 +0.0
998,996 - PFLU_RS04445 0.37 -0.0
998,996 - PFLU_RS04445 0.37 -1.8
998,996 - PFLU_RS04445 0.37 -0.4
998,996 - PFLU_RS04445 0.37 -0.4
999,068 - PFLU_RS04445 0.48 -1.1
999,068 - PFLU_RS04445 0.48 -0.6
999,088 + PFLU_RS04445 0.51 -2.0
999,088 + PFLU_RS04445 0.51 +0.6
999,088 + PFLU_RS04445 0.51 +1.2
999,088 + PFLU_RS04445 0.51 +1.9
999,088 + PFLU_RS04445 0.51 -2.0
999,089 - PFLU_RS04445 0.52 -1.0
999,089 - PFLU_RS04445 0.52 +0.5
999,106 - PFLU_RS04445 0.54 +2.2
999,197 - PFLU_RS04445 0.68 -1.1
999,197 - PFLU_RS04445 0.68 -1.4
999,197 - PFLU_RS04445 0.68 -2.3
999,197 - PFLU_RS04445 0.68 +0.4
999,235 - PFLU_RS04445 0.74 +0.5
999,375 + +0.2
999,574 + PFLU_RS04450 0.57 +0.6
999,702 + +0.4
999,702 + +0.5
999,703 - -0.8
999,703 - -1.0
999,703 - +0.4
999,705 + +0.0
999,705 + -0.2
999,705 + +0.3
999,705 + +1.8
999,705 + -0.4
999,705 + -1.8
999,705 + +1.4
999,705 + -0.5
999,705 + +0.7
999,706 - +0.4
999,706 - -1.4
999,706 - -1.4
999,706 - -0.1
999,706 - -0.1
999,706 - +0.9
999,706 - +0.6
999,706 - +0.9
999,706 - +1.4
999,706 - -0.4
999,706 - +0.1
999,706 - -1.5
999,706 - +1.6
999,712 + -1.8
999,712 + -0.1
999,712 + -0.2
999,712 + -0.2
999,712 + +0.3
999,712 + +0.6
999,712 + -0.7
999,712 + -1.5
999,712 + +0.6
999,712 + -1.8
999,713 - -0.1
999,713 - +1.6
999,713 - -1.7
999,713 - -1.7
999,713 - +2.8
999,713 - +0.4
999,713 - +0.2
999,713 - +1.9
999,713 - +1.2
999,713 - -1.1
999,713 - -2.7
999,713 - -0.3
999,715 + +0.8
999,715 + -1.6
999,716 - -2.0
999,716 - +0.7
999,716 - +1.0
999,742 + -0.4
999,743 - -0.8
999,743 - -0.2
999,743 - -2.9
999,743 - -1.1
999,774 + +1.0
999,774 + +1.2
999,774 + -0.3
999,829 + -1.8
999,829 + -1.1
999,836 + -2.1
999,836 + +0.2
999,836 + -1.5
999,874 + PFLU_RS04455 0.23 -0.1
999,874 + PFLU_RS04455 0.23 -2.5
999,874 + PFLU_RS04455 0.23 -0.6
999,966 + PFLU_RS04455 0.61 -1.1
999,966 + PFLU_RS04455 0.61 -0.6
999,966 + PFLU_RS04455 0.61 -1.3
999,966 + PFLU_RS04455 0.61 -1.1
999,966 + PFLU_RS04455 0.61 -2.3
999,966 + PFLU_RS04455 0.61 -1.8
999,966 + PFLU_RS04455 0.61 +1.6
999,966 + PFLU_RS04455 0.61 -1.4
999,966 + PFLU_RS04455 0.61 -0.6
999,966 + PFLU_RS04455 0.61 -2.7
999,966 + PFLU_RS04455 0.61 -0.4
999,966 + PFLU_RS04455 0.61 -0.8
999,966 + PFLU_RS04455 0.61 -0.4
999,966 + PFLU_RS04455 0.61 +0.4
999,966 + PFLU_RS04455 0.61 -0.1
999,966 + PFLU_RS04455 0.61 -3.0
999,966 + PFLU_RS04455 0.61 -2.1
999,966 + PFLU_RS04455 0.61 -1.6
999,966 + PFLU_RS04455 0.61 -0.4
999,966 + PFLU_RS04455 0.61 -1.6
1,000,016 + PFLU_RS04455 0.82 +0.9

Or see this region's nucleotide sequence