Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS00460

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
92,002	+		PFLU_RS00455	0.50	-0.9
92,002	+		PFLU_RS00455	0.50	+0.2
92,002	+		PFLU_RS00455	0.50	-1.0
92,002	+		PFLU_RS00455	0.50	-0.7
92,002	+		PFLU_RS00455	0.50	+0.5
92,002	+		PFLU_RS00455	0.50	+1.4
92,002	+		PFLU_RS00455	0.50	-0.4
92,002	+		PFLU_RS00455	0.50	+0.4
92,002	+		PFLU_RS00455	0.50	+0.7
92,002	+		PFLU_RS00455	0.50	+0.7
92,002	+		PFLU_RS00455	0.50	+0.4
92,002	+		PFLU_RS00455	0.50	+0.2
92,002	+		PFLU_RS00455	0.50	-0.2
92,003	-		PFLU_RS00455	0.50	-0.1
92,003	-		PFLU_RS00455	0.50	-0.9
92,003	-		PFLU_RS00455	0.50	+1.2
92,003	-		PFLU_RS00455	0.50	-0.8
92,003	-		PFLU_RS00455	0.50	-1.1
92,003	-		PFLU_RS00455	0.50	+1.6
92,003	-		PFLU_RS00455	0.50	-1.7
92,003	-		PFLU_RS00455	0.50	+1.0
92,003	-		PFLU_RS00455	0.50	+0.8
92,003	-		PFLU_RS00455	0.50	-0.6
92,003	-		PFLU_RS00455	0.50	+0.1
92,003	-		PFLU_RS00455	0.50	+0.1
92,003	-		PFLU_RS00455	0.50	+0.6
92,003	-		PFLU_RS00455	0.50	-0.1
92,089	+		PFLU_RS00455	0.69	-0.8
92,089	+		PFLU_RS00455	0.69	-3.1
92,090	-		PFLU_RS00455	0.69	+0.6
92,090	-		PFLU_RS00455	0.69	+1.0
92,170	-		PFLU_RS00455	0.86	-1.3
92,230	+				-0.8
92,230	+				-0.4
92,230	+				-0.1
92,231	-				-0.6
92,231	-				+0.4
92,233	+				+0.1
92,233	+				-0.3
92,233	+				-0.9
92,233	+				+1.0
92,233	+				+0.0
92,233	+				+1.3
92,233	+				-1.3
92,233	+				-1.0
92,233	+				-0.7
92,233	+				-0.3
92,233	+				+0.4
92,233	+				-0.4
92,234	-				-1.3
92,234	-				+0.1
92,234	-				-0.1
92,234	-				+1.2
92,234	-				+1.2
92,234	-				-1.7
92,234	-				-0.9
92,234	-				+0.9
92,234	-				-0.4
92,234	-				-0.6
92,234	-				+1.7
92,234	-				-1.4
92,234	-				+0.3
92,234	-				-0.6
92,234	-				-1.0
92,234	-				+0.7
92,277	+				-2.2
92,277	+				-2.1
92,277	+				-1.3
92,277	+				-0.1
92,277	+				-0.6
92,277	+				-1.0
92,278	-				+1.4
92,278	-				-0.7
92,378	+				-0.2
92,378	+				-0.2
92,378	+				+0.2
92,378	+				+0.1
92,378	+				-0.2
92,379	-				-2.6
92,379	-				-1.6
92,379	-				+2.4
92,379	-				-0.7
92,385	-				+1.4
92,503	+				-0.3
92,504	-				-0.9
92,504	-				-1.3
92,516	+				-0.4
92,516	+				+0.6
92,517	-				-1.9
92,517	-				-1.5
92,517	-				+0.4
92,517	-				+0.1
92,517	-				-1.6
92,531	+				-1.5
92,531	+				-0.6
92,531	+				-0.9
92,531	+				-0.5
92,531	+				-1.1
92,532	-				-2.8
92,532	-				-0.8
92,532	-				-0.7
92,532	-				+1.7
92,532	-				-0.1
92,532	-				-1.4
92,533	+				+0.2
92,533	+				-0.2
92,533	+				-1.1
92,533	+				-0.9
92,533	+				-0.6
92,533	+				+0.5
92,533	+				-0.9
92,533	+				-0.6
92,533	+				+0.1
92,534	-				+1.1
92,534	-				-1.1
92,534	-				+0.6
92,572	-				-0.1
92,603	+				-1.0
92,603	+				-0.5
92,603	+				-2.7
92,604	-				-0.6
92,604	-				-0.4
92,604	-				+1.0
92,604	-				-0.3
92,604	-				+0.6
92,604	-				+1.7
92,626	+				+0.2
92,628	+				-1.8
92,628	+				-0.3
92,628	+				-1.3
92,628	+				-0.6
92,628	+				-0.8
92,629	-				-1.0
92,629	-				-1.8
92,629	-				+0.1
92,629	-				-0.7
92,629	-				+0.1
92,629	-				+0.1
92,635	+				-2.7
92,635	+				-3.4
92,635	+				-0.8
92,635	+				-2.1
92,635	+				+1.2
92,635	+				-2.4
92,635	+				-3.5
92,635	+				-0.6
92,635	+				-0.8
92,635	+				-0.8
92,635	+				-2.3
92,635	+				-2.3
92,635	+				-0.6
92,635	+				-0.9
92,635	+				-0.1
92,635	+				-1.2
92,636	-				-0.5
92,636	-				+1.6
92,636	-				+0.6
92,636	-				+0.5
92,636	-				+0.4
92,636	-				-2.4
92,636	-				+0.3
92,636	-				+2.1
92,636	-				+1.4
92,636	-				+1.0
92,636	-				-0.7
92,636	-				+0.4
92,636	-				-0.8
92,636	-				-0.1
92,636	-				+0.3
92,636	-				-0.5
92,636	-				+0.3
92,636	-				-0.1
92,636	-				+0.5
92,636	-				+0.3
92,636	-				-1.5
92,636	-				-1.6
92,636	-				-0.8
92,636	-				+0.6
92,702	-				+0.7
92,733	-				+0.7
92,733	-				-0.3
92,778	+				-2.0
92,778	+				-0.8
92,778	+				-1.8
92,778	+				+0.1
92,778	+				-3.1
92,778	+				-0.8
92,778	+				-1.0
92,778	+				-2.6
92,778	+				-0.7
92,778	+				-0.8
92,779	-				-0.4
92,779	-				+0.1
92,779	-				-1.5
92,779	-				-0.5
92,779	-				-0.8
92,779	-				-0.8
92,779	-				+0.5
92,779	-				-0.4
92,809	+				-1.5
92,810	-				-1.1
92,855	+				-2.9
92,855	+				-4.1
92,855	+				-3.5
92,855	+				-2.5
92,856	-				+0.8
92,856	-				-0.1
92,856	-				-0.4
92,856	-				-3.0
92,856	-				+0.7
92,882	-				-0.9
92,972	+				-1.2
92,973	-				-2.4
92,973	-				-2.7
92,987	+				-1.5
92,987	+				-2.1
92,987	+				-0.1
92,987	+				-0.6
92,987	+				-2.3
92,987	+				-0.1
92,987	+				-3.8
92,988	-				+0.6
92,988	-				-2.7
92,988	-				-0.3
92,988	-				-2.1
92,988	-				-0.5
92,988	-				-2.4
92,988	-				-2.9
92,993	+				+0.0
92,993	+				-1.0
93,016	+				-0.5
93,016	+				-0.3
93,016	+				-0.1
93,017	-				-0.4
93,017	-				-0.5
93,017	-				-1.8
93,017	-				-1.9
93,017	-				-1.1
93,017	-				-1.1
93,017	-				-0.6
93,017	-				-0.7
93,017	-				-0.9
93,017	-				-1.5
93,017	-				-0.6
93,237	-		PFLU_RS00460	0.18	-1.9
93,237	-		PFLU_RS00460	0.18	-0.3
93,258	+		PFLU_RS00460	0.19	-1.6
93,258	+		PFLU_RS00460	0.19	-0.4
93,258	+		PFLU_RS00460	0.19	-2.1
93,258	+		PFLU_RS00460	0.19	-0.1
93,258	+		PFLU_RS00460	0.19	-2.5
93,258	+		PFLU_RS00460	0.19	-1.7
93,258	+		PFLU_RS00460	0.19	+0.4
93,259	-		PFLU_RS00460	0.19	-2.1
93,259	-		PFLU_RS00460	0.19	-2.5
93,259	-		PFLU_RS00460	0.19	-0.7
93,259	-		PFLU_RS00460	0.19	-0.5
93,344	+		PFLU_RS00460	0.26	-3.4
93,344	+		PFLU_RS00460	0.26	+0.6
93,344	+		PFLU_RS00460	0.26	-0.0
93,344	+		PFLU_RS00460	0.26	-2.9
93,345	-		PFLU_RS00460	0.26	-0.3
93,345	-		PFLU_RS00460	0.26	-1.6
93,345	-		PFLU_RS00460	0.26	+0.7
93,345	-		PFLU_RS00460	0.26	-3.6
93,345	-		PFLU_RS00460	0.26	-0.4
93,372	+		PFLU_RS00460	0.28	-1.5
93,372	+		PFLU_RS00460	0.28	-0.3
93,372	+		PFLU_RS00460	0.28	-1.0
93,372	+		PFLU_RS00460	0.28	+0.0
93,372	+		PFLU_RS00460	0.28	-0.6
93,372	+		PFLU_RS00460	0.28	-1.9
93,373	-		PFLU_RS00460	0.28	-1.5
93,373	-		PFLU_RS00460	0.28	-1.3
93,373	-		PFLU_RS00460	0.28	-1.4
93,373	-		PFLU_RS00460	0.28	-0.5
93,373	-		PFLU_RS00460	0.28	-1.9
93,373	-		PFLU_RS00460	0.28	-1.1
93,373	-		PFLU_RS00460	0.28	-2.4
93,373	-		PFLU_RS00460	0.28	-0.0
93,373	-		PFLU_RS00460	0.28	-0.8
93,413	+		PFLU_RS00460	0.31	-1.4
93,612	+		PFLU_RS00460	0.46	-1.9
93,612	+		PFLU_RS00460	0.46	+0.1
93,612	+		PFLU_RS00460	0.46	+0.1
93,612	+		PFLU_RS00460	0.46	-0.1
93,612	+		PFLU_RS00460	0.46	-1.3
93,612	+		PFLU_RS00460	0.46	-2.0
93,612	+		PFLU_RS00460	0.46	-0.1
93,612	+		PFLU_RS00460	0.46	-2.9
93,612	+		PFLU_RS00460	0.46	-2.5
93,613	-		PFLU_RS00460	0.46	-2.0
93,613	-		PFLU_RS00460	0.46	-0.5
93,613	-		PFLU_RS00460	0.46	-0.1
93,613	-		PFLU_RS00460	0.46	-1.5
93,613	-		PFLU_RS00460	0.46	-0.4
93,613	-		PFLU_RS00460	0.46	-0.0
93,613	-		PFLU_RS00460	0.46	-0.3
93,613	-		PFLU_RS00460	0.46	-2.6
93,613	-		PFLU_RS00460	0.46	-0.4
93,613	-		PFLU_RS00460	0.46	-0.3
93,628	+		PFLU_RS00460	0.47	-0.9
93,628	+		PFLU_RS00460	0.47	-0.9
93,628	+		PFLU_RS00460	0.47	-1.6
93,629	-		PFLU_RS00460	0.47	-2.6
93,708	+		PFLU_RS00460	0.53	-0.9
93,708	+		PFLU_RS00460	0.53	-0.1
93,708	+		PFLU_RS00460	0.53	-2.9
93,708	+		PFLU_RS00460	0.53	-0.1
93,709	-		PFLU_RS00460	0.53	-1.0
93,811	+		PFLU_RS00460	0.61	-1.8
93,811	+		PFLU_RS00460	0.61	-0.3
93,812	-		PFLU_RS00460	0.61	-0.3
93,819	+		PFLU_RS00460	0.61	-1.1
93,819	+		PFLU_RS00460	0.61	-2.0
93,820	-		PFLU_RS00460	0.62	-2.1
93,820	-		PFLU_RS00460	0.62	-0.6
93,820	-		PFLU_RS00460	0.62	-1.4
93,877	-		PFLU_RS00460	0.66	-1.3
93,952	-		PFLU_RS00460	0.71	+0.1
93,952	-		PFLU_RS00460	0.71	-0.3
93,987	+		PFLU_RS00460	0.74	-1.0
93,988	-		PFLU_RS00460	0.74	-1.5
93,988	-		PFLU_RS00460	0.74	-1.8
93,988	-		PFLU_RS00460	0.74	-2.0
94,175	+		PFLU_RS00460	0.88	-2.3
94,175	+		PFLU_RS00460	0.88	+0.6
94,176	-		PFLU_RS00460	0.88	-0.6
94,189	+		PFLU_RS00460	0.89	-2.3
94,189	+		PFLU_RS00460	0.89	-0.4
94,189	+		PFLU_RS00460	0.89	-1.4
94,190	-		PFLU_RS00460	0.89	-0.3
94,190	-		PFLU_RS00460	0.89	-0.3
94,190	-		PFLU_RS00460	0.89	-3.1
94,239	+				-0.2
94,239	+				+0.3
94,239	+				+0.4
94,239	+				-1.1
94,239	+				-0.1
94,239	+				+0.7
94,239	+				-0.6
94,239	+				+1.0
94,239	+				+0.6
94,239	+				-1.1
94,239	+				-2.4
94,239	+				+0.5
94,239	+				-1.0
94,239	+				-1.1
94,239	+				+0.2
94,239	+				+0.4
94,239	+				-2.7
94,239	+				-0.9
94,239	+				-0.1
94,239	+				-0.8
94,240	-				-2.0
94,240	-				-0.2
94,240	-				-2.0
94,240	-				-0.8
94,240	-				-1.1
94,240	-				-1.7
94,240	-				-2.3
94,240	-				-1.7
94,240	-				-2.3
94,240	-				-1.9
94,240	-				-1.1
94,240	-				-0.3
94,240	-				-0.0
94,240	-				-3.0
94,240	-				-1.6
94,240	-				-0.2
94,263	+				-0.7
94,332	+				+0.7
94,332	+				-0.8
94,332	+				+0.0
94,333	-				+0.2
94,333	-				-2.6
94,335	+				-1.7
94,335	+				-0.9
94,335	+				+1.8
94,335	+				-2.5
94,335	+				-0.7
94,335	+				-0.1
94,336	-				-1.2
94,336	-				-1.6
94,336	-				-1.6
94,336	-				-0.8
94,336	-				-2.4
94,336	-				-2.6
94,336	-				-0.8
94,424	+				+0.3
94,424	+				-1.6
94,424	+				+0.2
94,424	+				+0.4
94,424	+				-1.3
94,425	-				-0.3
94,425	-				-0.3
94,425	-				-0.1
94,425	-				-3.0
94,425	-				-0.1
94,425	-				-0.1
94,599	+		PFLU_RS00465	0.14	-1.2
94,838	-		PFLU_RS00465	0.33	-0.6
94,838	-		PFLU_RS00465	0.33	-0.2
94,907	+		PFLU_RS00465	0.39	-2.3
94,907	+		PFLU_RS00465	0.39	-0.6
94,908	-		PFLU_RS00465	0.39	-1.9
94,908	-		PFLU_RS00465	0.39	+0.5
94,908	-		PFLU_RS00465	0.39	-2.1
95,048	+		PFLU_RS00465	0.50	-0.6
95,048	+		PFLU_RS00465	0.50	+1.4
95,049	-		PFLU_RS00465	0.50	-0.3
95,210	+		PFLU_RS00465	0.63	-0.3
95,210	+		PFLU_RS00465	0.63	-0.9
95,210	+		PFLU_RS00465	0.63	+0.3
95,210	+		PFLU_RS00465	0.63	+0.4
95,210	+		PFLU_RS00465	0.63	-0.0
95,210	+		PFLU_RS00465	0.63	+0.8
95,210	+		PFLU_RS00465	0.63	+1.2
95,210	+		PFLU_RS00465	0.63	-1.2
95,210	+		PFLU_RS00465	0.63	-1.0
95,210	+		PFLU_RS00465	0.63	-1.1
95,210	+		PFLU_RS00465	0.63	-0.1
95,210	+		PFLU_RS00465	0.63	-0.3
95,210	+		PFLU_RS00465	0.63	+0.1
95,210	+		PFLU_RS00465	0.63	-0.1
95,210	+		PFLU_RS00465	0.63	+0.3
95,210	+		PFLU_RS00465	0.63	+1.4
95,210	+		PFLU_RS00465	0.63	-0.5
95,211	-		PFLU_RS00465	0.63	+0.0
95,211	-		PFLU_RS00465	0.63	+0.1
95,211	-		PFLU_RS00465	0.63	-0.8
95,211	-		PFLU_RS00465	0.63	-1.9
95,211	-		PFLU_RS00465	0.63	-0.6
95,211	-		PFLU_RS00465	0.63	-1.6
95,211	-		PFLU_RS00465	0.63	-0.6
95,211	-		PFLU_RS00465	0.63	+0.1
95,211	-		PFLU_RS00465	0.63	-2.1
95,211	-		PFLU_RS00465	0.63	-0.8
95,211	-		PFLU_RS00465	0.63	+0.6
95,211	-		PFLU_RS00465	0.63	-2.6
95,211	-		PFLU_RS00465	0.63	-0.8
95,211	-		PFLU_RS00465	0.63	-0.0
95,211	-		PFLU_RS00465	0.63	+0.2
95,211	-		PFLU_RS00465	0.63	-0.0
95,211	-		PFLU_RS00465	0.63	-0.0
95,271	-		PFLU_RS00465	0.68	-0.6