Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28705 and BPHYT_RS28710 are separated by 86 nucleotides BPHYT_RS28710 and BPHYT_RS28715 are separated by 116 nucleotides BPHYT_RS28715 and BPHYT_RS28720 are separated by 133 nucleotides
BPHYT_RS28705: BPHYT_RS28705 - IclR family transcriptional regulator, at 1,993,607 to 1,994,413
_RS28705
BPHYT_RS28710: BPHYT_RS28710 - 3-(2-hydroxyphenyl) propionic acid transporter, at 1,994,500 to 1,995,933
_RS28710
BPHYT_RS28715: BPHYT_RS28715 - cupin, at 1,996,050 to 1,996,502
_RS28715
BPHYT_RS28720: BPHYT_RS28720 - shikimate dehydrogenase, at 1,996,636 to 1,997,472
_RS28720
Position (kb) 1994
1995
1996 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1993.693 kb on - strand, within BPHYT_RS28705 at 1994.587 kb on + strand at 1994.587 kb on + strand at 1994.704 kb on + strand, within BPHYT_RS28710 at 1994.966 kb on - strand, within BPHYT_RS28710 at 1995.301 kb on + strand, within BPHYT_RS28710 at 1995.387 kb on - strand, within BPHYT_RS28710 at 1995.521 kb on + strand, within BPHYT_RS28710 at 1995.596 kb on + strand, within BPHYT_RS28710 at 1995.597 kb on - strand, within BPHYT_RS28710 at 1995.754 kb on - strand, within BPHYT_RS28710 at 1995.778 kb on - strand, within BPHYT_RS28710 at 1995.850 kb on + strand at 1995.851 kb on - strand at 1996.034 kb on + strand at 1996.035 kb on - strand at 1996.043 kb on + strand at 1996.044 kb on - strand at 1996.293 kb on + strand, within BPHYT_RS28715 at 1996.300 kb on - strand, within BPHYT_RS28715 at 1996.300 kb on - strand, within BPHYT_RS28715 at 1996.595 kb on + strand at 1996.596 kb on - strand at 1996.647 kb on + strand at 1996.648 kb on - strand at 1996.854 kb on + strand, within BPHYT_RS28720
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,993,693 - BPHYT_RS28705 0.11 +0.8 1,994,587 + -0.0 1,994,587 + -0.5 1,994,704 + BPHYT_RS28710 0.14 +1.0 1,994,966 - BPHYT_RS28710 0.32 +0.1 1,995,301 + BPHYT_RS28710 0.56 -0.7 1,995,387 - BPHYT_RS28710 0.62 -0.7 1,995,521 + BPHYT_RS28710 0.71 +2.0 1,995,596 + BPHYT_RS28710 0.76 +0.0 1,995,597 - BPHYT_RS28710 0.76 +0.1 1,995,754 - BPHYT_RS28710 0.87 +3.8 1,995,778 - BPHYT_RS28710 0.89 +0.4 1,995,850 + -0.3 1,995,851 - +0.1 1,996,034 + -1.3 1,996,035 - -0.3 1,996,043 + -0.1 1,996,044 - +0.3 1,996,293 + BPHYT_RS28715 0.54 +0.4 1,996,300 - BPHYT_RS28715 0.55 +0.0 1,996,300 - BPHYT_RS28715 0.55 +0.7 1,996,595 + +0.3 1,996,596 - -1.9 1,996,647 + +2.4 1,996,648 - +0.1 1,996,854 + BPHYT_RS28720 0.26 +0.6
Or see this region's nucleotide sequence