Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS26865 and BPHYT_RS26870 are separated by 278 nucleotides BPHYT_RS26870 and BPHYT_RS26875 are separated by 19 nucleotides BPHYT_RS26875 and BPHYT_RS26880 are separated by 94 nucleotides BPHYT_RS26880 and BPHYT_RS26885 are separated by 123 nucleotides
BPHYT_RS26865: BPHYT_RS26865 - GNAT family acetyltransferase, at 1,600,593 to 1,601,027
_RS26865
BPHYT_RS26870: BPHYT_RS26870 - cytochrome C551, at 1,601,306 to 1,601,974
_RS26870
BPHYT_RS26875: BPHYT_RS26875 - procollagen-proline dioxygenase, at 1,601,994 to 1,602,881
_RS26875
BPHYT_RS26880: BPHYT_RS26880 - ketosteroid isomerase, at 1,602,976 to 1,603,467
_RS26880
BPHYT_RS26885: BPHYT_RS26885 - DSBA oxidoreductase, at 1,603,591 to 1,605,156
_RS26885
Position (kb) 1601
1602
1603 Strain fitness (log2 ratio) -1
0
1 at 1601.053 kb on + strand at 1601.053 kb on + strand at 1601.462 kb on + strand, within BPHYT_RS26870 at 1601.630 kb on - strand, within BPHYT_RS26870 at 1601.871 kb on - strand, within BPHYT_RS26870 at 1601.973 kb on - strand at 1602.105 kb on - strand, within BPHYT_RS26875 at 1602.105 kb on - strand, within BPHYT_RS26875 at 1602.106 kb on + strand, within BPHYT_RS26875 at 1602.115 kb on + strand, within BPHYT_RS26875 at 1602.148 kb on - strand, within BPHYT_RS26875 at 1602.646 kb on + strand, within BPHYT_RS26875 at 1602.647 kb on - strand at 1602.652 kb on + strand, within BPHYT_RS26875 at 1602.881 kb on + strand at 1602.882 kb on - strand at 1602.882 kb on - strand at 1602.935 kb on - strand at 1602.951 kb on + strand at 1602.951 kb on + strand at 1603.007 kb on + strand at 1603.208 kb on + strand, within BPHYT_RS26880 at 1603.209 kb on - strand, within BPHYT_RS26880
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,601,053 + +0.0 1,601,053 + +0.3 1,601,462 + BPHYT_RS26870 0.23 +0.3 1,601,630 - BPHYT_RS26870 0.48 +0.1 1,601,871 - BPHYT_RS26870 0.84 -0.8 1,601,973 - +0.7 1,602,105 - BPHYT_RS26875 0.12 +0.2 1,602,105 - BPHYT_RS26875 0.12 -0.8 1,602,106 + BPHYT_RS26875 0.13 -0.1 1,602,115 + BPHYT_RS26875 0.14 -0.5 1,602,148 - BPHYT_RS26875 0.17 +0.7 1,602,646 + BPHYT_RS26875 0.73 +0.4 1,602,647 - +0.7 1,602,652 + BPHYT_RS26875 0.74 -0.8 1,602,881 + +0.2 1,602,882 - -0.6 1,602,882 - -1.2 1,602,935 - +1.2 1,602,951 + -0.9 1,602,951 + -0.6 1,603,007 + -0.4 1,603,208 + BPHYT_RS26880 0.47 +0.7 1,603,209 - BPHYT_RS26880 0.47 -0.2
Or see this region's nucleotide sequence