Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25820

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25815 and BPHYT_RS25820 are separated by 252 nucleotidesBPHYT_RS25820 and BPHYT_RS25825 overlap by 4 nucleotides BPHYT_RS25815: BPHYT_RS25815 - deoxyribose-phosphate aldolase, at 1,365,576 to 1,366,586 _RS25815 BPHYT_RS25820: BPHYT_RS25820 - sugar ABC transporter, at 1,366,839 to 1,368,461 _RS25820 BPHYT_RS25825: BPHYT_RS25825 - ABC transporter permease, at 1,368,458 to 1,369,459 _RS25825 Position (kb) 1366 1367 1368 1369Strain fitness (log2 ratio) -1 0 1 2 3 4at 1366.048 kb on + strand, within BPHYT_RS25815at 1366.223 kb on - strand, within BPHYT_RS25815at 1366.644 kb on - strandat 1367.044 kb on - strand, within BPHYT_RS25820at 1367.463 kb on + strand, within BPHYT_RS25820at 1367.464 kb on - strand, within BPHYT_RS25820at 1368.047 kb on + strand, within BPHYT_RS25820at 1368.573 kb on - strand, within BPHYT_RS25825at 1368.782 kb on + strand, within BPHYT_RS25825at 1368.783 kb on - strand, within BPHYT_RS25825at 1368.783 kb on - strand, within BPHYT_RS25825at 1369.073 kb on + strandat 1369.073 kb on + strand, within BPHYT_RS25825at 1369.458 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,366,048 + BPHYT_RS25815 0.47 -0.1
1,366,223 - BPHYT_RS25815 0.64 -0.5
1,366,644 - +0.0
1,367,044 - BPHYT_RS25820 0.13 +4.6
1,367,463 + BPHYT_RS25820 0.38 -0.2
1,367,464 - BPHYT_RS25820 0.39 +0.4
1,368,047 + BPHYT_RS25820 0.74 +0.7
1,368,573 - BPHYT_RS25825 0.11 -0.5
1,368,782 + BPHYT_RS25825 0.32 -0.0
1,368,783 - BPHYT_RS25825 0.32 -0.7
1,368,783 - BPHYT_RS25825 0.32 +1.1
1,369,073 + -1.3
1,369,073 + BPHYT_RS25825 0.61 -0.6
1,369,458 - -0.1

Or see this region's nucleotide sequence