Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23875

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23870 and BPHYT_RS23875 are separated by 235 nucleotidesBPHYT_RS23875 and BPHYT_RS23880 overlap by 4 nucleotides BPHYT_RS23870: BPHYT_RS23870 - LacI family transcription regulator, at 921,443 to 922,429 _RS23870 BPHYT_RS23875: BPHYT_RS23875 - sugar ABC transporter ATP-binding protein, at 922,665 to 924,314 _RS23875 BPHYT_RS23880: BPHYT_RS23880 - sugar ABC transporter permease, at 924,311 to 925,342 _RS23880 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -1 0 1 2at 921.771 kb on + strand, within BPHYT_RS23870at 922.100 kb on - strand, within BPHYT_RS23870at 922.101 kb on + strand, within BPHYT_RS23870at 923.389 kb on - strand, within BPHYT_RS23875at 924.281 kb on + strandat 924.281 kb on + strandat 924.546 kb on + strand, within BPHYT_RS23880at 925.199 kb on + strand, within BPHYT_RS23880

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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921,771 + BPHYT_RS23870 0.33 -0.1
922,100 - BPHYT_RS23870 0.67 +0.5
922,101 + BPHYT_RS23870 0.67 +1.2
923,389 - BPHYT_RS23875 0.44 +2.0
924,281 + -0.3
924,281 + -0.3
924,546 + BPHYT_RS23880 0.23 +0.0
925,199 + BPHYT_RS23880 0.86 +0.5

Or see this region's nucleotide sequence