Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23665 and BPHYT_RS23670 are separated by 64 nucleotides BPHYT_RS23670 and BPHYT_RS23675 are separated by 153 nucleotides BPHYT_RS23675 and BPHYT_RS23680 are separated by 71 nucleotides BPHYT_RS23680 and BPHYT_RS23685 are separated by 139 nucleotides BPHYT_RS23685 and BPHYT_RS23690 are separated by 96 nucleotides
BPHYT_RS23665: BPHYT_RS23665 - hypothetical protein, at 880,190 to 880,423
_RS23665
BPHYT_RS23670: BPHYT_RS23670 - AsnC family transcriptional regulator, at 880,488 to 880,955
_RS23670
BPHYT_RS23675: BPHYT_RS23675 - lysine transporter LysE, at 881,109 to 881,762
_RS23675
BPHYT_RS23680: BPHYT_RS23680 - Fe-S protein, at 881,834 to 882,007
_RS23680
BPHYT_RS23685: BPHYT_RS23685 - membrane protein, at 882,147 to 882,467
_RS23685
BPHYT_RS23690: BPHYT_RS23690 - hypothetical protein, at 882,564 to 883,073
_RS23690
Position (kb) 881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 880.472 kb on + strand at 880.473 kb on - strand at 880.546 kb on - strand, within BPHYT_RS23670 at 880.634 kb on - strand, within BPHYT_RS23670 at 880.634 kb on - strand, within BPHYT_RS23670 at 880.651 kb on - strand, within BPHYT_RS23670 at 880.741 kb on + strand, within BPHYT_RS23670 at 880.959 kb on + strand at 880.959 kb on + strand at 880.960 kb on - strand at 880.963 kb on + strand at 880.963 kb on + strand at 880.964 kb on - strand at 881.084 kb on - strand at 881.136 kb on + strand at 881.136 kb on + strand at 881.136 kb on + strand at 881.137 kb on - strand at 881.137 kb on - strand at 881.138 kb on + strand at 881.139 kb on - strand at 881.160 kb on + strand at 881.326 kb on - strand, within BPHYT_RS23675 at 882.029 kb on - strand at 882.034 kb on - strand at 882.087 kb on + strand at 882.097 kb on - strand at 882.111 kb on + strand at 882.321 kb on + strand, within BPHYT_RS23685 at 882.322 kb on - strand, within BPHYT_RS23685 at 882.343 kb on - strand, within BPHYT_RS23685 at 882.566 kb on - strand at 882.566 kb on - strand at 882.629 kb on - strand, within BPHYT_RS23690 at 882.649 kb on + strand, within BPHYT_RS23690 at 882.680 kb on - strand, within BPHYT_RS23690
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 880,472 + -3.1 880,473 - -0.5 880,546 - BPHYT_RS23670 0.12 -0.4 880,634 - BPHYT_RS23670 0.31 -1.2 880,634 - BPHYT_RS23670 0.31 +0.2 880,651 - BPHYT_RS23670 0.35 +1.0 880,741 + BPHYT_RS23670 0.54 -0.1 880,959 + -1.6 880,959 + +0.4 880,960 - +0.6 880,963 + +0.5 880,963 + +0.1 880,964 - +0.6 881,084 - +1.9 881,136 + +0.5 881,136 + +2.0 881,136 + -0.7 881,137 - +0.7 881,137 - -0.3 881,138 + +0.3 881,139 - -0.4 881,160 + +0.1 881,326 - BPHYT_RS23675 0.33 +0.7 882,029 - +0.6 882,034 - -0.1 882,087 + +0.4 882,097 - +0.0 882,111 + +1.9 882,321 + BPHYT_RS23685 0.54 +0.2 882,322 - BPHYT_RS23685 0.55 +0.1 882,343 - BPHYT_RS23685 0.61 -0.3 882,566 - +0.2 882,566 - -0.4 882,629 - BPHYT_RS23690 0.13 -1.6 882,649 + BPHYT_RS23690 0.17 +0.2 882,680 - BPHYT_RS23690 0.23 -0.2
Or see this region's nucleotide sequence