Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23625

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23615 and BPHYT_RS23620 are separated by 67 nucleotidesBPHYT_RS23620 and BPHYT_RS23625 are separated by 351 nucleotidesBPHYT_RS23625 and BPHYT_RS23630 are separated by 306 nucleotidesBPHYT_RS23630 and BPHYT_RS23635 are separated by 177 nucleotides BPHYT_RS23615: BPHYT_RS23615 - XRE family transcriptional regulator, at 870,088 to 870,771 _RS23615 BPHYT_RS23620: BPHYT_RS23620 - hypothetical protein, at 870,839 to 871,030 _RS23620 BPHYT_RS23625: BPHYT_RS23625 - membrane protein, at 871,382 to 871,936 _RS23625 BPHYT_RS23630: BPHYT_RS23630 - hypothetical protein, at 872,243 to 872,503 _RS23630 BPHYT_RS23635: BPHYT_RS23635 - phosphoesterase, at 872,681 to 874,687 _RS23635 Position (kb) 871 872Strain fitness (log2 ratio) -2 -1 0 1 2at 870.508 kb on + strand, within BPHYT_RS23615at 870.508 kb on + strand, within BPHYT_RS23615at 870.638 kb on + strand, within BPHYT_RS23615at 870.699 kb on - strand, within BPHYT_RS23615at 871.316 kb on - strandat 871.316 kb on - strandat 871.500 kb on + strand, within BPHYT_RS23625at 871.566 kb on + strand, within BPHYT_RS23625at 871.626 kb on + strand, within BPHYT_RS23625at 871.626 kb on + strand, within BPHYT_RS23625at 872.004 kb on + strandat 872.004 kb on + strandat 872.005 kb on - strandat 872.188 kb on + strandat 872.188 kb on + strandat 872.275 kb on + strandat 872.275 kb on + strand, within BPHYT_RS23630at 872.411 kb on + strand, within BPHYT_RS23630at 872.412 kb on - strand, within BPHYT_RS23630at 872.633 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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870,508 + BPHYT_RS23615 0.61 +2.6
870,508 + BPHYT_RS23615 0.61 -0.9
870,638 + BPHYT_RS23615 0.80 +0.2
870,699 - BPHYT_RS23615 0.89 -0.3
871,316 - -0.2
871,316 - -0.1
871,500 + BPHYT_RS23625 0.21 +0.9
871,566 + BPHYT_RS23625 0.33 +1.1
871,626 + BPHYT_RS23625 0.44 -0.3
871,626 + BPHYT_RS23625 0.44 +0.9
872,004 + -0.7
872,004 + -0.5
872,005 - +0.3
872,188 + +0.6
872,188 + -1.1
872,275 + +1.5
872,275 + BPHYT_RS23630 0.12 +1.0
872,411 + BPHYT_RS23630 0.64 -2.0
872,412 - BPHYT_RS23630 0.65 -0.3
872,633 + +0.6

Or see this region's nucleotide sequence