Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23615 and BPHYT_RS23620 are separated by 67 nucleotides BPHYT_RS23620 and BPHYT_RS23625 are separated by 351 nucleotides BPHYT_RS23625 and BPHYT_RS23630 are separated by 306 nucleotides BPHYT_RS23630 and BPHYT_RS23635 are separated by 177 nucleotides
BPHYT_RS23615: BPHYT_RS23615 - XRE family transcriptional regulator, at 870,088 to 870,771
_RS23615
BPHYT_RS23620: BPHYT_RS23620 - hypothetical protein, at 870,839 to 871,030
_RS23620
BPHYT_RS23625: BPHYT_RS23625 - membrane protein, at 871,382 to 871,936
_RS23625
BPHYT_RS23630: BPHYT_RS23630 - hypothetical protein, at 872,243 to 872,503
_RS23630
BPHYT_RS23635: BPHYT_RS23635 - phosphoesterase, at 872,681 to 874,687
_RS23635
Position (kb) 871
872 Strain fitness (log2 ratio) -2
-1
0
1
2 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.508 kb on + strand, within BPHYT_RS23615 at 870.638 kb on + strand, within BPHYT_RS23615 at 870.699 kb on - strand, within BPHYT_RS23615 at 871.316 kb on - strand at 871.316 kb on - strand at 871.500 kb on + strand, within BPHYT_RS23625 at 871.566 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625 at 871.626 kb on + strand, within BPHYT_RS23625 at 872.004 kb on + strand at 872.004 kb on + strand at 872.005 kb on - strand at 872.188 kb on + strand at 872.188 kb on + strand at 872.275 kb on + strand at 872.275 kb on + strand, within BPHYT_RS23630 at 872.411 kb on + strand, within BPHYT_RS23630 at 872.412 kb on - strand, within BPHYT_RS23630 at 872.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 870,508 + BPHYT_RS23615 0.61 +2.6 870,508 + BPHYT_RS23615 0.61 -0.9 870,638 + BPHYT_RS23615 0.80 +0.2 870,699 - BPHYT_RS23615 0.89 -0.3 871,316 - -0.2 871,316 - -0.1 871,500 + BPHYT_RS23625 0.21 +0.9 871,566 + BPHYT_RS23625 0.33 +1.1 871,626 + BPHYT_RS23625 0.44 -0.3 871,626 + BPHYT_RS23625 0.44 +0.9 872,004 + -0.7 872,004 + -0.5 872,005 - +0.3 872,188 + +0.6 872,188 + -1.1 872,275 + +1.5 872,275 + BPHYT_RS23630 0.12 +1.0 872,411 + BPHYT_RS23630 0.64 -2.0 872,412 - BPHYT_RS23630 0.65 -0.3 872,633 + +0.6
Or see this region's nucleotide sequence