Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22195

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22190 and BPHYT_RS22195 are separated by 22 nucleotidesBPHYT_RS22195 and BPHYT_RS22200 are separated by 146 nucleotides BPHYT_RS22190: BPHYT_RS22190 - nucleoid-structuring protein H-NS, at 537,221 to 538,072 _RS22190 BPHYT_RS22195: BPHYT_RS22195 - hypothetical protein, at 538,095 to 538,580 _RS22195 BPHYT_RS22200: BPHYT_RS22200 - cardiolipin synthetase, at 538,727 to 539,989 _RS22200 Position (kb) 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1at 537.452 kb on + strand, within BPHYT_RS22190at 537.916 kb on - strand, within BPHYT_RS22190at 538.093 kb on - strandat 538.310 kb on - strand, within BPHYT_RS22195at 538.414 kb on + strand, within BPHYT_RS22195at 538.833 kb on - strandat 539.347 kb on + strand, within BPHYT_RS22200at 539.348 kb on - strand, within BPHYT_RS22200at 539.412 kb on - strand, within BPHYT_RS22200at 539.453 kb on - strand, within BPHYT_RS22200

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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537,452 + BPHYT_RS22190 0.27 +0.1
537,916 - BPHYT_RS22190 0.82 -3.0
538,093 - +0.5
538,310 - BPHYT_RS22195 0.44 +0.3
538,414 + BPHYT_RS22195 0.66 +0.2
538,833 - -0.2
539,347 + BPHYT_RS22200 0.49 -0.1
539,348 - BPHYT_RS22200 0.49 +0.4
539,412 - BPHYT_RS22200 0.54 +0.5
539,453 - BPHYT_RS22200 0.57 +0.5

Or see this region's nucleotide sequence