Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20770 and BPHYT_RS20775 are separated by 7 nucleotides BPHYT_RS20775 and BPHYT_RS20780 overlap by 4 nucleotides BPHYT_RS20780 and BPHYT_RS20785 are separated by 213 nucleotides
BPHYT_RS20770: BPHYT_RS20770 - hypothetical protein, at 221,214 to 222,383
_RS20770
BPHYT_RS20775: BPHYT_RS20775 - 3-ketoacyl-ACP reductase, at 222,391 to 223,170
_RS20775
BPHYT_RS20780: BPHYT_RS20780 - acyl-CoA dehydrogenase, at 223,167 to 224,312
_RS20780
BPHYT_RS20785: BPHYT_RS20785 - CoA-transferase, at 224,526 to 226,013
_RS20785
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 222.306 kb on + strand at 222.306 kb on + strand at 222.396 kb on - strand at 222.683 kb on + strand, within BPHYT_RS20775 at 222.684 kb on - strand, within BPHYT_RS20775 at 222.887 kb on - strand, within BPHYT_RS20775 at 223.208 kb on + strand at 223.954 kb on + strand, within BPHYT_RS20780 at 223.993 kb on + strand, within BPHYT_RS20780 at 224.194 kb on + strand, within BPHYT_RS20780 at 225.105 kb on + strand, within BPHYT_RS20785 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.180 kb on + strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785 at 225.181 kb on - strand, within BPHYT_RS20785
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 222,306 + +0.2 222,306 + -0.1 222,396 - +0.4 222,683 + BPHYT_RS20775 0.37 -0.1 222,684 - BPHYT_RS20775 0.38 -0.1 222,887 - BPHYT_RS20775 0.64 +0.9 223,208 + -0.6 223,954 + BPHYT_RS20780 0.69 -0.5 223,993 + BPHYT_RS20780 0.72 +1.1 224,194 + BPHYT_RS20780 0.90 +4.8 225,105 + BPHYT_RS20785 0.39 +0.1 225,180 + BPHYT_RS20785 0.44 +0.2 225,180 + BPHYT_RS20785 0.44 +0.4 225,181 - BPHYT_RS20785 0.44 -1.3 225,181 - BPHYT_RS20785 0.44 +0.1
Or see this region's nucleotide sequence