Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20660 and BPHYT_RS20665 are separated by 329 nucleotides BPHYT_RS20665 and BPHYT_RS20670 are separated by 92 nucleotides
BPHYT_RS20660: BPHYT_RS20660 - 2-methylisocitrate lyase, at 195,477 to 196,301
_RS20660
BPHYT_RS20665: BPHYT_RS20665 - LysR family transcriptional regulator, at 196,631 to 197,530
_RS20665
BPHYT_RS20670: BPHYT_RS20670 - carbon-nitrogen hydrolase, at 197,623 to 198,579
_RS20670
Position (kb) 196
197
198 Strain fitness (log2 ratio) -1
0
1 at 195.754 kb on + strand, within BPHYT_RS20660 at 195.782 kb on - strand, within BPHYT_RS20660 at 196.201 kb on + strand, within BPHYT_RS20660 at 196.202 kb on - strand, within BPHYT_RS20660 at 196.491 kb on + strand at 196.491 kb on + strand at 196.492 kb on - strand at 196.492 kb on - strand at 196.492 kb on - strand at 196.492 kb on - strand at 196.492 kb on - strand at 196.495 kb on + strand at 196.496 kb on - strand at 196.544 kb on + strand at 196.544 kb on + strand at 197.057 kb on + strand, within BPHYT_RS20665 at 197.785 kb on + strand, within BPHYT_RS20670 at 198.094 kb on + strand, within BPHYT_RS20670 at 198.094 kb on + strand, within BPHYT_RS20670 at 198.290 kb on + strand, within BPHYT_RS20670 at 198.290 kb on + strand, within BPHYT_RS20670 at 198.348 kb on - strand, within BPHYT_RS20670 at 198.457 kb on + strand, within BPHYT_RS20670 at 198.464 kb on + strand, within BPHYT_RS20670
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 195,754 + BPHYT_RS20660 0.34 +0.4 195,782 - BPHYT_RS20660 0.37 +1.3 196,201 + BPHYT_RS20660 0.88 +0.8 196,202 - BPHYT_RS20660 0.88 -0.3 196,491 + +0.1 196,491 + -0.0 196,492 - +0.1 196,492 - -0.7 196,492 - -0.6 196,492 - -0.9 196,492 - -0.9 196,495 + +1.3 196,496 - +0.8 196,544 + +0.5 196,544 + +0.1 197,057 + BPHYT_RS20665 0.47 +0.7 197,785 + BPHYT_RS20670 0.17 -0.0 198,094 + BPHYT_RS20670 0.49 -0.7 198,094 + BPHYT_RS20670 0.49 -0.3 198,290 + BPHYT_RS20670 0.70 -0.8 198,290 + BPHYT_RS20670 0.70 +1.6 198,348 - BPHYT_RS20670 0.76 -1.3 198,457 + BPHYT_RS20670 0.87 +0.2 198,464 + BPHYT_RS20670 0.88 +0.6
Or see this region's nucleotide sequence