Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20165 and BPHYT_RS20170 are separated by 168 nucleotides BPHYT_RS20170 and BPHYT_RS20175 are separated by 56 nucleotides BPHYT_RS20175 and BPHYT_RS20180 overlap by 4 nucleotides
BPHYT_RS20165: BPHYT_RS20165 - UDP-N-acetyl-D-mannosamine dehydrogenase, at 66,730 to 67,968
_RS20165
BPHYT_RS20170: BPHYT_RS20170 - sugar transporter, at 68,137 to 70,359
_RS20170
BPHYT_RS20175: BPHYT_RS20175 - protein-tyrosine-phosphatase, at 70,416 to 70,868
_RS20175
BPHYT_RS20180: BPHYT_RS20180 - sugar ABC transporter substrate-binding protein, at 70,865 to 71,917
_RS20180
Position (kb) 68
69
70
71 Strain fitness (log2 ratio) -1
0
1 at 67.514 kb on - strand, within BPHYT_RS20165 at 67.676 kb on - strand, within BPHYT_RS20165 at 67.728 kb on + strand, within BPHYT_RS20165 at 68.162 kb on + strand at 68.450 kb on - strand, within BPHYT_RS20170 at 68.727 kb on + strand, within BPHYT_RS20170 at 69.303 kb on - strand, within BPHYT_RS20170 at 69.871 kb on - strand, within BPHYT_RS20170 at 70.860 kb on - strand at 70.889 kb on + strand at 71.069 kb on + strand, within BPHYT_RS20180 at 71.182 kb on + strand, within BPHYT_RS20180 at 71.251 kb on + strand, within BPHYT_RS20180
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 67,514 - BPHYT_RS20165 0.63 -0.4 67,676 - BPHYT_RS20165 0.76 -0.7 67,728 + BPHYT_RS20165 0.81 +0.5 68,162 + -1.1 68,450 - BPHYT_RS20170 0.14 -1.4 68,727 + BPHYT_RS20170 0.27 -0.3 69,303 - BPHYT_RS20170 0.52 -1.3 69,871 - BPHYT_RS20170 0.78 +0.2 70,860 - +1.5 70,889 + +0.9 71,069 + BPHYT_RS20180 0.19 -0.0 71,182 + BPHYT_RS20180 0.30 -0.9 71,251 + BPHYT_RS20180 0.37 +0.6
Or see this region's nucleotide sequence