Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17765

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS17755 and BPHYT_RS17760 are separated by 91 nucleotidesBPHYT_RS17760 and BPHYT_RS17765 overlap by 4 nucleotidesBPHYT_RS17765 and BPHYT_RS17770 are separated by 94 nucleotides BPHYT_RS17755: BPHYT_RS17755 - ABC transporter substrate-binding protein, at 4,008,372 to 4,008,932 _RS17755 BPHYT_RS17760: BPHYT_RS17760 - ABC transporter permease, at 4,009,024 to 4,009,791 _RS17760 BPHYT_RS17765: BPHYT_RS17765 - toluene ABC transporter ATP-binding protein, at 4,009,788 to 4,010,609 _RS17765 BPHYT_RS17770: BPHYT_RS17770 - thiamine-phosphate pyrophosphorylase, at 4,010,704 to 4,011,345 _RS17770 Position (kb) 4009 4010 4011Strain fitness (log2 ratio) -3 -2 -1 0 1at 4009.025 kb on + strandat 4009.026 kb on - strandat 4009.026 kb on - strandat 4009.026 kb on - strandat 4009.082 kb on + strandat 4009.292 kb on + strand, within BPHYT_RS17760at 4009.292 kb on + strand, within BPHYT_RS17760at 4009.577 kb on + strand, within BPHYT_RS17760at 4009.578 kb on - strand, within BPHYT_RS17760at 4009.580 kb on + strand, within BPHYT_RS17760at 4009.581 kb on - strand, within BPHYT_RS17760at 4009.643 kb on + strand, within BPHYT_RS17760at 4009.643 kb on + strand, within BPHYT_RS17760at 4009.644 kb on - strand, within BPHYT_RS17760at 4009.644 kb on - strand, within BPHYT_RS17760at 4009.648 kb on - strand, within BPHYT_RS17760at 4009.740 kb on - strandat 4009.740 kb on - strandat 4009.963 kb on + strand, within BPHYT_RS17765at 4009.964 kb on - strand, within BPHYT_RS17765at 4009.964 kb on - strand, within BPHYT_RS17765at 4009.964 kb on - strand, within BPHYT_RS17765at 4010.107 kb on + strand, within BPHYT_RS17765at 4010.108 kb on - strand, within BPHYT_RS17765at 4010.108 kb on - strand, within BPHYT_RS17765at 4010.108 kb on - strand, within BPHYT_RS17765at 4010.586 kb on + strandat 4010.587 kb on - strandat 4010.587 kb on - strandat 4010.628 kb on - strandat 4010.643 kb on + strandat 4010.643 kb on + strandat 4010.644 kb on - strandat 4010.645 kb on + strandat 4010.689 kb on - strandat 4010.692 kb on + strandat 4010.692 kb on + strandat 4010.692 kb on + strandat 4010.692 kb on + strandat 4010.693 kb on - strandat 4010.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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4,009,025 + -1.7
4,009,026 - +1.4
4,009,026 - -1.0
4,009,026 - +0.0
4,009,082 + -3.0
4,009,292 + BPHYT_RS17760 0.35 -1.8
4,009,292 + BPHYT_RS17760 0.35 +0.0
4,009,577 + BPHYT_RS17760 0.72 -1.4
4,009,578 - BPHYT_RS17760 0.72 -2.8
4,009,580 + BPHYT_RS17760 0.72 -2.8
4,009,581 - BPHYT_RS17760 0.73 -1.3
4,009,643 + BPHYT_RS17760 0.81 -3.3
4,009,643 + BPHYT_RS17760 0.81 -2.4
4,009,644 - BPHYT_RS17760 0.81 -2.5
4,009,644 - BPHYT_RS17760 0.81 -3.3
4,009,648 - BPHYT_RS17760 0.81 -2.2
4,009,740 - -2.5
4,009,740 - -2.7
4,009,963 + BPHYT_RS17765 0.21 -2.3
4,009,964 - BPHYT_RS17765 0.21 -1.8
4,009,964 - BPHYT_RS17765 0.21 -2.5
4,009,964 - BPHYT_RS17765 0.21 -3.0
4,010,107 + BPHYT_RS17765 0.39 +0.7
4,010,108 - BPHYT_RS17765 0.39 -1.7
4,010,108 - BPHYT_RS17765 0.39 -1.5
4,010,108 - BPHYT_RS17765 0.39 -1.5
4,010,586 + -3.1
4,010,587 - +0.7
4,010,587 - -3.4
4,010,628 - +0.2
4,010,643 + -2.1
4,010,643 + -1.3
4,010,644 - +0.7
4,010,645 + +0.4
4,010,689 - -0.6
4,010,692 + -0.0
4,010,692 + -0.3
4,010,692 + +0.2
4,010,692 + +0.3
4,010,693 - +0.7
4,010,693 - +0.1

Or see this region's nucleotide sequence