Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS17110

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS17100 and BPHYT_RS17105 are separated by 77 nucleotidesBPHYT_RS17105 and BPHYT_RS17110 are separated by 108 nucleotidesBPHYT_RS17110 and BPHYT_RS17115 are separated by 70 nucleotides BPHYT_RS17100: BPHYT_RS17100 - RNA pyrophosphohydrolase, at 3,876,715 to 3,877,455 _RS17100 BPHYT_RS17105: BPHYT_RS17105 - hypothetical protein, at 3,877,533 to 3,878,090 _RS17105 BPHYT_RS17110: BPHYT_RS17110 - glutamate 5-kinase, at 3,878,199 to 3,879,317 _RS17110 BPHYT_RS17115: BPHYT_RS17115 - GTPase Obg, at 3,879,388 to 3,880,509 _RS17115 Position (kb) 3878 3879 3880Strain fitness (log2 ratio) -1 0 1at 3877.329 kb on - strand, within BPHYT_RS17100at 3877.453 kb on + strandat 3877.454 kb on - strandat 3877.531 kb on + strandat 3877.610 kb on + strand, within BPHYT_RS17105at 3877.610 kb on + strand, within BPHYT_RS17105at 3877.611 kb on - strand, within BPHYT_RS17105at 3877.613 kb on + strand, within BPHYT_RS17105at 3877.614 kb on - strand, within BPHYT_RS17105at 3877.614 kb on - strand, within BPHYT_RS17105at 3877.616 kb on + strand, within BPHYT_RS17105at 3877.617 kb on - strand, within BPHYT_RS17105at 3877.617 kb on - strand, within BPHYT_RS17105at 3877.617 kb on - strand, within BPHYT_RS17105at 3877.617 kb on - strand, within BPHYT_RS17105at 3877.638 kb on + strand, within BPHYT_RS17105at 3877.639 kb on - strand, within BPHYT_RS17105at 3877.639 kb on - strand, within BPHYT_RS17105at 3877.639 kb on - strand, within BPHYT_RS17105at 3877.639 kb on - strand, within BPHYT_RS17105at 3877.639 kb on - strand, within BPHYT_RS17105at 3877.639 kb on - strandat 3877.805 kb on + strand, within BPHYT_RS17105at 3877.806 kb on - strand, within BPHYT_RS17105at 3877.838 kb on + strand, within BPHYT_RS17105at 3877.848 kb on + strand, within BPHYT_RS17105at 3877.849 kb on - strand, within BPHYT_RS17105at 3877.872 kb on + strand, within BPHYT_RS17105at 3877.872 kb on + strand, within BPHYT_RS17105at 3877.872 kb on + strand, within BPHYT_RS17105at 3877.888 kb on - strand, within BPHYT_RS17105at 3877.974 kb on + strand, within BPHYT_RS17105at 3877.990 kb on - strand, within BPHYT_RS17105at 3877.990 kb on - strand, within BPHYT_RS17105at 3877.998 kb on + strand, within BPHYT_RS17105at 3877.999 kb on - strand, within BPHYT_RS17105at 3877.999 kb on - strand, within BPHYT_RS17105at 3877.999 kb on - strand, within BPHYT_RS17105at 3878.058 kb on + strandat 3878.060 kb on + strandat 3878.166 kb on - strandat 3878.201 kb on - strandat 3879.390 kb on - strandat 3879.392 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
3,877,329 - BPHYT_RS17100 0.83 -1.0
3,877,453 + +0.1
3,877,454 - -0.3
3,877,531 + +0.2
3,877,610 + BPHYT_RS17105 0.14 +0.7
3,877,610 + BPHYT_RS17105 0.14 +0.7
3,877,611 - BPHYT_RS17105 0.14 -0.7
3,877,613 + BPHYT_RS17105 0.14 -1.1
3,877,614 - BPHYT_RS17105 0.15 -0.5
3,877,614 - BPHYT_RS17105 0.15 -0.1
3,877,616 + BPHYT_RS17105 0.15 -0.1
3,877,617 - BPHYT_RS17105 0.15 -0.4
3,877,617 - BPHYT_RS17105 0.15 +0.6
3,877,617 - BPHYT_RS17105 0.15 -0.1
3,877,617 - BPHYT_RS17105 0.15 -0.0
3,877,638 + BPHYT_RS17105 0.19 -0.1
3,877,639 - BPHYT_RS17105 0.19 +0.2
3,877,639 - BPHYT_RS17105 0.19 -0.5
3,877,639 - BPHYT_RS17105 0.19 -1.6
3,877,639 - BPHYT_RS17105 0.19 -0.0
3,877,639 - BPHYT_RS17105 0.19 -0.4
3,877,639 - -0.0
3,877,805 + BPHYT_RS17105 0.49 -1.6
3,877,806 - BPHYT_RS17105 0.49 -0.4
3,877,838 + BPHYT_RS17105 0.55 +0.4
3,877,848 + BPHYT_RS17105 0.56 +0.5
3,877,849 - BPHYT_RS17105 0.57 +0.4
3,877,872 + BPHYT_RS17105 0.61 +0.2
3,877,872 + BPHYT_RS17105 0.61 -0.2
3,877,872 + BPHYT_RS17105 0.61 -0.6
3,877,888 - BPHYT_RS17105 0.64 -0.0
3,877,974 + BPHYT_RS17105 0.79 -0.8
3,877,990 - BPHYT_RS17105 0.82 +1.0
3,877,990 - BPHYT_RS17105 0.82 -0.0
3,877,998 + BPHYT_RS17105 0.83 -0.6
3,877,999 - BPHYT_RS17105 0.84 +0.4
3,877,999 - BPHYT_RS17105 0.84 -0.3
3,877,999 - BPHYT_RS17105 0.84 -1.1
3,878,058 + +0.6
3,878,060 + +0.2
3,878,166 - +1.2
3,878,201 - +0.4
3,879,390 - +0.0
3,879,392 - -0.5

Or see this region's nucleotide sequence