Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16940 and BPHYT_RS16945 overlap by 4 nucleotides BPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotides BPHYT_RS16950 and BPHYT_RS16955 overlap by 4 nucleotides
BPHYT_RS16940: BPHYT_RS16940 - short-chain dehydrogenase, at 3,841,557 to 3,842,333
_RS16940
BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010
_RS16945
BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) <small>(from data)</small>, at 3,843,047 to 3,844,099
_RS16950
BPHYT_RS16955: BPHYT_RS16955 - IclR family transcriptional regulator, at 3,844,096 to 3,845,088
_RS16955
Position (kb) 3843
3844
3845 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.073 kb on + strand, within BPHYT_RS16940 at 3842.074 kb on - strand, within BPHYT_RS16940 at 3842.373 kb on + strand at 3842.374 kb on - strand at 3842.419 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.421 kb on + strand, within BPHYT_RS16945 at 3842.422 kb on - strand, within BPHYT_RS16945 at 3842.422 kb on - strand at 3842.492 kb on - strand, within BPHYT_RS16945 at 3842.979 kb on + strand at 3842.979 kb on + strand at 3842.980 kb on - strand at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.301 kb on - strand, within BPHYT_RS16950 at 3843.492 kb on - strand, within BPHYT_RS16950 at 3843.512 kb on - strand, within BPHYT_RS16950 at 3844.214 kb on + strand, within BPHYT_RS16955 at 3844.214 kb on + strand, within BPHYT_RS16955 at 3844.214 kb on + strand at 3844.214 kb on + strand, within BPHYT_RS16955 at 3844.215 kb on - strand, within BPHYT_RS16955 at 3844.215 kb on - strand, within BPHYT_RS16955 at 3844.215 kb on - strand, within BPHYT_RS16955 at 3844.215 kb on - strand, within BPHYT_RS16955 at 3844.340 kb on + strand, within BPHYT_RS16955 at 3844.340 kb on + strand, within BPHYT_RS16955 at 3844.562 kb on + strand, within BPHYT_RS16955 at 3844.562 kb on + strand, within BPHYT_RS16955 at 3844.562 kb on + strand at 3844.562 kb on + strand, within BPHYT_RS16955 at 3844.563 kb on - strand, within BPHYT_RS16955 at 3844.563 kb on - strand, within BPHYT_RS16955 at 3844.563 kb on - strand, within BPHYT_RS16955 at 3844.759 kb on + strand, within BPHYT_RS16955 at 3845.070 kb on + strand at 3845.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 3,842,073 + BPHYT_RS16940 0.66 -0.5 3,842,073 + BPHYT_RS16940 0.66 +0.1 3,842,073 + BPHYT_RS16940 0.66 -0.1 3,842,073 + BPHYT_RS16940 0.66 -1.6 3,842,074 - BPHYT_RS16940 0.67 -0.0 3,842,373 + +0.6 3,842,374 - -0.6 3,842,419 + BPHYT_RS16945 0.13 +0.5 3,842,421 + BPHYT_RS16945 0.13 +0.3 3,842,421 + BPHYT_RS16945 0.13 +1.1 3,842,422 - BPHYT_RS16945 0.14 -1.5 3,842,422 - +2.5 3,842,492 - BPHYT_RS16945 0.24 -0.8 3,842,979 + +0.2 3,842,979 + -1.6 3,842,980 - +0.6 3,843,301 - BPHYT_RS16950 0.24 +3.9 3,843,301 - BPHYT_RS16950 0.24 -1.6 3,843,301 - BPHYT_RS16950 0.24 +2.9 3,843,492 - BPHYT_RS16950 0.42 +4.0 3,843,512 - BPHYT_RS16950 0.44 +0.4 3,844,214 + BPHYT_RS16955 0.12 -0.0 3,844,214 + BPHYT_RS16955 0.12 -0.6 3,844,214 + -0.6 3,844,214 + BPHYT_RS16955 0.12 +0.6 3,844,215 - BPHYT_RS16955 0.12 +0.2 3,844,215 - BPHYT_RS16955 0.12 -0.2 3,844,215 - BPHYT_RS16955 0.12 -0.2 3,844,215 - BPHYT_RS16955 0.12 +0.5 3,844,340 + BPHYT_RS16955 0.25 +0.5 3,844,340 + BPHYT_RS16955 0.25 -0.3 3,844,562 + BPHYT_RS16955 0.47 -0.5 3,844,562 + BPHYT_RS16955 0.47 +0.2 3,844,562 + +1.5 3,844,562 + BPHYT_RS16955 0.47 +1.0 3,844,563 - BPHYT_RS16955 0.47 -2.0 3,844,563 - BPHYT_RS16955 0.47 -0.5 3,844,563 - BPHYT_RS16955 0.47 -0.5 3,844,759 + BPHYT_RS16955 0.67 +0.3 3,845,070 + +0.6 3,845,071 - -0.4
Or see this region's nucleotide sequence