Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16950

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16940 and BPHYT_RS16945 overlap by 4 nucleotidesBPHYT_RS16945 and BPHYT_RS16950 are separated by 36 nucleotidesBPHYT_RS16950 and BPHYT_RS16955 overlap by 4 nucleotides BPHYT_RS16940: BPHYT_RS16940 - short-chain dehydrogenase, at 3,841,557 to 3,842,333 _RS16940 BPHYT_RS16945: BPHYT_RS16945 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 3,842,330 to 3,843,010 _RS16945 BPHYT_RS16950: BPHYT_RS16950 - 2-dehydro-3-deoxygalactonokinase DgoK (EC 2.7.1.58) (from data), at 3,843,047 to 3,844,099 _RS16950 BPHYT_RS16955: BPHYT_RS16955 - IclR family transcriptional regulator, at 3,844,096 to 3,845,088 _RS16955 Position (kb) 3843 3844 3845Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3842.073 kb on + strand, within BPHYT_RS16940at 3842.073 kb on + strand, within BPHYT_RS16940at 3842.073 kb on + strand, within BPHYT_RS16940at 3842.073 kb on + strand, within BPHYT_RS16940at 3842.074 kb on - strand, within BPHYT_RS16940at 3842.373 kb on + strandat 3842.374 kb on - strandat 3842.419 kb on + strand, within BPHYT_RS16945at 3842.421 kb on + strand, within BPHYT_RS16945at 3842.421 kb on + strand, within BPHYT_RS16945at 3842.422 kb on - strand, within BPHYT_RS16945at 3842.422 kb on - strandat 3842.492 kb on - strand, within BPHYT_RS16945at 3842.979 kb on + strandat 3842.979 kb on + strandat 3842.980 kb on - strandat 3843.301 kb on - strand, within BPHYT_RS16950at 3843.301 kb on - strand, within BPHYT_RS16950at 3843.301 kb on - strand, within BPHYT_RS16950at 3843.492 kb on - strand, within BPHYT_RS16950at 3843.512 kb on - strand, within BPHYT_RS16950at 3844.214 kb on + strand, within BPHYT_RS16955at 3844.214 kb on + strand, within BPHYT_RS16955at 3844.214 kb on + strandat 3844.214 kb on + strand, within BPHYT_RS16955at 3844.215 kb on - strand, within BPHYT_RS16955at 3844.215 kb on - strand, within BPHYT_RS16955at 3844.215 kb on - strand, within BPHYT_RS16955at 3844.215 kb on - strand, within BPHYT_RS16955at 3844.340 kb on + strand, within BPHYT_RS16955at 3844.340 kb on + strand, within BPHYT_RS16955at 3844.562 kb on + strand, within BPHYT_RS16955at 3844.562 kb on + strand, within BPHYT_RS16955at 3844.562 kb on + strandat 3844.562 kb on + strand, within BPHYT_RS16955at 3844.563 kb on - strand, within BPHYT_RS16955at 3844.563 kb on - strand, within BPHYT_RS16955at 3844.563 kb on - strand, within BPHYT_RS16955at 3844.759 kb on + strand, within BPHYT_RS16955at 3845.070 kb on + strandat 3845.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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3,842,073 + BPHYT_RS16940 0.66 -0.5
3,842,073 + BPHYT_RS16940 0.66 +0.1
3,842,073 + BPHYT_RS16940 0.66 -0.1
3,842,073 + BPHYT_RS16940 0.66 -1.6
3,842,074 - BPHYT_RS16940 0.67 -0.0
3,842,373 + +0.6
3,842,374 - -0.6
3,842,419 + BPHYT_RS16945 0.13 +0.5
3,842,421 + BPHYT_RS16945 0.13 +0.3
3,842,421 + BPHYT_RS16945 0.13 +1.1
3,842,422 - BPHYT_RS16945 0.14 -1.5
3,842,422 - +2.5
3,842,492 - BPHYT_RS16945 0.24 -0.8
3,842,979 + +0.2
3,842,979 + -1.6
3,842,980 - +0.6
3,843,301 - BPHYT_RS16950 0.24 +3.9
3,843,301 - BPHYT_RS16950 0.24 -1.6
3,843,301 - BPHYT_RS16950 0.24 +2.9
3,843,492 - BPHYT_RS16950 0.42 +4.0
3,843,512 - BPHYT_RS16950 0.44 +0.4
3,844,214 + BPHYT_RS16955 0.12 -0.0
3,844,214 + BPHYT_RS16955 0.12 -0.6
3,844,214 + -0.6
3,844,214 + BPHYT_RS16955 0.12 +0.6
3,844,215 - BPHYT_RS16955 0.12 +0.2
3,844,215 - BPHYT_RS16955 0.12 -0.2
3,844,215 - BPHYT_RS16955 0.12 -0.2
3,844,215 - BPHYT_RS16955 0.12 +0.5
3,844,340 + BPHYT_RS16955 0.25 +0.5
3,844,340 + BPHYT_RS16955 0.25 -0.3
3,844,562 + BPHYT_RS16955 0.47 -0.5
3,844,562 + BPHYT_RS16955 0.47 +0.2
3,844,562 + +1.5
3,844,562 + BPHYT_RS16955 0.47 +1.0
3,844,563 - BPHYT_RS16955 0.47 -2.0
3,844,563 - BPHYT_RS16955 0.47 -0.5
3,844,563 - BPHYT_RS16955 0.47 -0.5
3,844,759 + BPHYT_RS16955 0.67 +0.3
3,845,070 + +0.6
3,845,071 - -0.4

Or see this region's nucleotide sequence