Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14000 and BPHYT_RS14005 are separated by 236 nucleotides BPHYT_RS14005 and BPHYT_RS14010 are separated by 26 nucleotides BPHYT_RS14010 and BPHYT_RS14015 are separated by 106 nucleotides
BPHYT_RS14000: BPHYT_RS14000 - glutaminyl-tRNA synthetase, at 3,199,941 to 3,201,650
_RS14000
BPHYT_RS14005: BPHYT_RS14005 - ABC transporter, at 3,201,887 to 3,202,765
_RS14005
BPHYT_RS14010: BPHYT_RS14010 - NUDIX hydrolase, at 3,202,792 to 3,203,241
_RS14010
BPHYT_RS14015: BPHYT_RS14015 - hypothetical protein, at 3,203,348 to 3,203,737
_RS14015
Position (kb) 3201
3202
3203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3201.849 kb on - strand at 3201.947 kb on - strand at 3201.947 kb on - strand at 3201.981 kb on + strand, within BPHYT_RS14005 at 3202.049 kb on + strand, within BPHYT_RS14005 at 3202.050 kb on - strand, within BPHYT_RS14005 at 3202.573 kb on + strand, within BPHYT_RS14005 at 3202.653 kb on - strand, within BPHYT_RS14005 at 3202.862 kb on + strand, within BPHYT_RS14010 at 3202.862 kb on + strand, within BPHYT_RS14010 at 3202.862 kb on + strand, within BPHYT_RS14010 at 3202.863 kb on - strand, within BPHYT_RS14010 at 3202.863 kb on - strand, within BPHYT_RS14010 at 3203.027 kb on + strand, within BPHYT_RS14010 at 3203.226 kb on + strand at 3203.515 kb on + strand, within BPHYT_RS14015 at 3203.515 kb on + strand, within BPHYT_RS14015 at 3203.622 kb on + strand, within BPHYT_RS14015 at 3203.622 kb on + strand, within BPHYT_RS14015 at 3203.622 kb on + strand, within BPHYT_RS14015
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 3,201,849 - +0.8 3,201,947 - +0.5 3,201,947 - +0.8 3,201,981 + BPHYT_RS14005 0.11 +2.4 3,202,049 + BPHYT_RS14005 0.18 +0.9 3,202,050 - BPHYT_RS14005 0.19 +0.5 3,202,573 + BPHYT_RS14005 0.78 +1.9 3,202,653 - BPHYT_RS14005 0.87 +0.7 3,202,862 + BPHYT_RS14010 0.16 -2.0 3,202,862 + BPHYT_RS14010 0.16 -0.7 3,202,862 + BPHYT_RS14010 0.16 +0.2 3,202,863 - BPHYT_RS14010 0.16 +2.5 3,202,863 - BPHYT_RS14010 0.16 +0.8 3,203,027 + BPHYT_RS14010 0.52 -0.5 3,203,226 + -1.0 3,203,515 + BPHYT_RS14015 0.43 -0.1 3,203,515 + BPHYT_RS14015 0.43 +1.8 3,203,622 + BPHYT_RS14015 0.70 +1.9 3,203,622 + BPHYT_RS14015 0.70 -1.0 3,203,622 + BPHYT_RS14015 0.70 +0.0
Or see this region's nucleotide sequence