Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14005

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS14000 and BPHYT_RS14005 are separated by 236 nucleotidesBPHYT_RS14005 and BPHYT_RS14010 are separated by 26 nucleotidesBPHYT_RS14010 and BPHYT_RS14015 are separated by 106 nucleotides BPHYT_RS14000: BPHYT_RS14000 - glutaminyl-tRNA synthetase, at 3,199,941 to 3,201,650 _RS14000 BPHYT_RS14005: BPHYT_RS14005 - ABC transporter, at 3,201,887 to 3,202,765 _RS14005 BPHYT_RS14010: BPHYT_RS14010 - NUDIX hydrolase, at 3,202,792 to 3,203,241 _RS14010 BPHYT_RS14015: BPHYT_RS14015 - hypothetical protein, at 3,203,348 to 3,203,737 _RS14015 Position (kb) 3201 3202 3203Strain fitness (log2 ratio) -2 -1 0 1 2at 3201.849 kb on - strandat 3201.947 kb on - strandat 3201.947 kb on - strandat 3201.981 kb on + strand, within BPHYT_RS14005at 3202.049 kb on + strand, within BPHYT_RS14005at 3202.050 kb on - strand, within BPHYT_RS14005at 3202.573 kb on + strand, within BPHYT_RS14005at 3202.653 kb on - strand, within BPHYT_RS14005at 3202.862 kb on + strand, within BPHYT_RS14010at 3202.862 kb on + strand, within BPHYT_RS14010at 3202.862 kb on + strand, within BPHYT_RS14010at 3202.863 kb on - strand, within BPHYT_RS14010at 3202.863 kb on - strand, within BPHYT_RS14010at 3203.027 kb on + strand, within BPHYT_RS14010at 3203.226 kb on + strandat 3203.515 kb on + strand, within BPHYT_RS14015at 3203.515 kb on + strand, within BPHYT_RS14015at 3203.622 kb on + strand, within BPHYT_RS14015at 3203.622 kb on + strand, within BPHYT_RS14015at 3203.622 kb on + strand, within BPHYT_RS14015

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
3,201,849 - +0.8
3,201,947 - +0.5
3,201,947 - +0.8
3,201,981 + BPHYT_RS14005 0.11 +2.4
3,202,049 + BPHYT_RS14005 0.18 +0.9
3,202,050 - BPHYT_RS14005 0.19 +0.5
3,202,573 + BPHYT_RS14005 0.78 +1.9
3,202,653 - BPHYT_RS14005 0.87 +0.7
3,202,862 + BPHYT_RS14010 0.16 -2.0
3,202,862 + BPHYT_RS14010 0.16 -0.7
3,202,862 + BPHYT_RS14010 0.16 +0.2
3,202,863 - BPHYT_RS14010 0.16 +2.5
3,202,863 - BPHYT_RS14010 0.16 +0.8
3,203,027 + BPHYT_RS14010 0.52 -0.5
3,203,226 + -1.0
3,203,515 + BPHYT_RS14015 0.43 -0.1
3,203,515 + BPHYT_RS14015 0.43 +1.8
3,203,622 + BPHYT_RS14015 0.70 +1.9
3,203,622 + BPHYT_RS14015 0.70 -1.0
3,203,622 + BPHYT_RS14015 0.70 +0.0

Or see this region's nucleotide sequence