Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06460 and BPHYT_RS06465 overlap by 8 nucleotides BPHYT_RS06465 and BPHYT_RS06470 are separated by 152 nucleotides BPHYT_RS06470 and BPHYT_RS06475 are separated by 258 nucleotides BPHYT_RS06475 and BPHYT_RS06480 are separated by 92 nucleotides
BPHYT_RS06460: BPHYT_RS06460 - histidine kinase, at 1,468,730 to 1,471,564
_RS06460
BPHYT_RS06465: BPHYT_RS06465 - transcriptional regulator, at 1,471,557 to 1,472,255
_RS06465
BPHYT_RS06470: BPHYT_RS06470 - membrane protein, at 1,472,408 to 1,472,728
_RS06470
BPHYT_RS06475: BPHYT_RS06475 - membrane protein, at 1,472,987 to 1,473,598
_RS06475
BPHYT_RS06480: BPHYT_RS06480 - ABC transporter permease, at 1,473,691 to 1,476,180
_RS06480
Position (kb) 1472
1473 Strain fitness (log2 ratio) -1
0
1
2 at 1471.534 kb on + strand at 1471.860 kb on + strand, within BPHYT_RS06465 at 1471.861 kb on - strand, within BPHYT_RS06465 at 1471.861 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.155 kb on - strand, within BPHYT_RS06465 at 1472.156 kb on + strand, within BPHYT_RS06465 at 1472.156 kb on + strand, within BPHYT_RS06465 at 1472.233 kb on - strand at 1472.326 kb on - strand at 1472.326 kb on - strand at 1472.334 kb on - strand at 1472.336 kb on - strand at 1472.336 kb on - strand at 1472.336 kb on - strand at 1472.339 kb on + strand at 1472.339 kb on + strand at 1472.428 kb on - strand at 1472.582 kb on + strand, within BPHYT_RS06470 at 1472.583 kb on - strand, within BPHYT_RS06470 at 1472.745 kb on + strand at 1472.762 kb on - strand at 1472.837 kb on - strand at 1472.845 kb on + strand at 1472.845 kb on + strand at 1472.845 kb on + strand at 1472.845 kb on + strand at 1472.847 kb on + strand at 1472.847 kb on + strand at 1472.847 kb on + strand at 1472.848 kb on - strand at 1473.044 kb on + strand at 1473.218 kb on - strand, within BPHYT_RS06475
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,471,534 + -0.6 1,471,860 + BPHYT_RS06465 0.43 +0.9 1,471,861 - BPHYT_RS06465 0.43 +0.9 1,471,861 - BPHYT_RS06465 0.43 -0.6 1,472,155 - BPHYT_RS06465 0.86 +0.0 1,472,155 - BPHYT_RS06465 0.86 -0.0 1,472,155 - BPHYT_RS06465 0.86 -0.1 1,472,155 - BPHYT_RS06465 0.86 +0.3 1,472,155 - BPHYT_RS06465 0.86 -0.1 1,472,155 - BPHYT_RS06465 0.86 -0.4 1,472,155 - BPHYT_RS06465 0.86 -0.3 1,472,155 - BPHYT_RS06465 0.86 -0.4 1,472,155 - BPHYT_RS06465 0.86 +0.3 1,472,156 + BPHYT_RS06465 0.86 +0.3 1,472,156 + BPHYT_RS06465 0.86 -0.1 1,472,233 - +0.8 1,472,326 - +0.5 1,472,326 - +1.2 1,472,334 - +0.7 1,472,336 - +0.5 1,472,336 - -0.4 1,472,336 - -0.0 1,472,339 + -0.2 1,472,339 + +0.9 1,472,428 - -1.2 1,472,582 + BPHYT_RS06470 0.54 +1.8 1,472,583 - BPHYT_RS06470 0.55 +0.5 1,472,745 + -0.6 1,472,762 - +0.0 1,472,837 - +0.6 1,472,845 + -0.3 1,472,845 + +0.6 1,472,845 + -0.2 1,472,845 + +0.2 1,472,847 + -0.2 1,472,847 + +0.3 1,472,847 + +0.0 1,472,848 - -1.1 1,473,044 + -1.7 1,473,218 - BPHYT_RS06475 0.38 +0.2
Or see this region's nucleotide sequence