Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS06145 and BPHYT_RS06150 are separated by 25 nucleotides BPHYT_RS06150 and BPHYT_RS06155 are separated by 349 nucleotides
BPHYT_RS06145: BPHYT_RS06145 - acetolactate synthase, at 1,397,741 to 1,399,393
_RS06145
BPHYT_RS06150: BPHYT_RS06150 - aldehyde dehydrogenase, at 1,399,419 to 1,400,855
_RS06150
BPHYT_RS06155: BPHYT_RS06155 - DEAD/DEAH box helicase, at 1,401,205 to 1,402,674
_RS06155
Position (kb)
1399
1400
1401 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1398.653 kb on + strand, within BPHYT_RS06145 at 1398.654 kb on - strand, within BPHYT_RS06145 at 1398.707 kb on - strand, within BPHYT_RS06145 at 1398.707 kb on - strand, within BPHYT_RS06145 at 1398.849 kb on - strand, within BPHYT_RS06145 at 1398.849 kb on - strand, within BPHYT_RS06145 at 1398.896 kb on + strand, within BPHYT_RS06145 at 1398.897 kb on - strand, within BPHYT_RS06145 at 1399.217 kb on + strand, within BPHYT_RS06145 at 1399.217 kb on + strand, within BPHYT_RS06145 at 1399.230 kb on - strand at 1399.335 kb on - strand at 1399.434 kb on + strand at 1399.434 kb on + strand at 1399.440 kb on + strand at 1399.441 kb on - strand at 1399.443 kb on + strand at 1399.443 kb on + strand at 1399.444 kb on - strand at 1399.444 kb on - strand at 1399.444 kb on - strand at 1399.740 kb on - strand, within BPHYT_RS06150 at 1400.220 kb on + strand, within BPHYT_RS06150 at 1400.220 kb on + strand, within BPHYT_RS06150 at 1400.221 kb on - strand, within BPHYT_RS06150 at 1400.221 kb on - strand, within BPHYT_RS06150 at 1400.253 kb on + strand, within BPHYT_RS06150 at 1400.254 kb on - strand, within BPHYT_RS06150 at 1400.311 kb on - strand, within BPHYT_RS06150 at 1400.755 kb on - strand at 1400.755 kb on - strand at 1400.974 kb on + strand at 1400.975 kb on - strand at 1401.021 kb on + strand at 1401.022 kb on - strand at 1401.095 kb on - strand at 1401.295 kb on + strand at 1401.296 kb on - strand at 1401.532 kb on + strand, within BPHYT_RS06155 at 1401.841 kb on + strand, within BPHYT_RS06155
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,398,653 + BPHYT_RS06145 0.55 +0.6 1,398,654 - BPHYT_RS06145 0.55 -0.2 1,398,707 - BPHYT_RS06145 0.58 -0.8 1,398,707 - BPHYT_RS06145 0.58 -0.4 1,398,849 - BPHYT_RS06145 0.67 +0.8 1,398,849 - BPHYT_RS06145 0.67 -1.2 1,398,896 + BPHYT_RS06145 0.70 +0.4 1,398,897 - BPHYT_RS06145 0.70 +0.1 1,399,217 + BPHYT_RS06145 0.89 -0.3 1,399,217 + BPHYT_RS06145 0.89 -0.3 1,399,230 - +0.4 1,399,335 - -0.2 1,399,434 + +0.8 1,399,434 + +0.4 1,399,440 + +0.6 1,399,441 - +0.4 1,399,443 + -0.4 1,399,443 + +0.8 1,399,444 - -0.6 1,399,444 - -0.2 1,399,444 - -0.2 1,399,740 - BPHYT_RS06150 0.22 +1.1 1,400,220 + BPHYT_RS06150 0.56 -0.2 1,400,220 + BPHYT_RS06150 0.56 +1.0 1,400,221 - BPHYT_RS06150 0.56 -2.4 1,400,221 - BPHYT_RS06150 0.56 +0.3 1,400,253 + BPHYT_RS06150 0.58 +2.4 1,400,254 - BPHYT_RS06150 0.58 +0.6 1,400,311 - BPHYT_RS06150 0.62 +1.5 1,400,755 - -0.2 1,400,755 - -0.4 1,400,974 + +1.6 1,400,975 - -1.1 1,401,021 + +0.3 1,401,022 - +0.7 1,401,095 - -1.8 1,401,295 + -1.4 1,401,296 - -1.8 1,401,532 + BPHYT_RS06155 0.22 -1.1 1,401,841 + BPHYT_RS06155 0.43 -1.2
Or see this region's nucleotide sequence