Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04365 and BPHYT_RS04370 are separated by 377 nucleotides BPHYT_RS04370 and BPHYT_RS04375 overlap by 4 nucleotides BPHYT_RS04375 and BPHYT_RS04380 are separated by 7 nucleotides
BPHYT_RS04365: BPHYT_RS04365 - membrane protein, at 1,004,981 to 1,006,405
_RS04365
BPHYT_RS04370: BPHYT_RS04370 - glycosyl transferase, at 1,006,783 to 1,007,628
_RS04370
BPHYT_RS04375: BPHYT_RS04375 - epimerase, at 1,007,625 to 1,008,581
_RS04375
BPHYT_RS04380: BPHYT_RS04380 - glycosyl transferase, at 1,008,589 to 1,009,620
_RS04380
Position (kb)
1006
1007
1008 Strain fitness (log2 ratio)
-1
0
1 at 1005.939 kb on + strand, within BPHYT_RS04365 at 1005.940 kb on - strand, within BPHYT_RS04365 at 1005.940 kb on - strand, within BPHYT_RS04365 at 1005.940 kb on - strand, within BPHYT_RS04365 at 1006.030 kb on + strand, within BPHYT_RS04365 at 1006.031 kb on - strand, within BPHYT_RS04365 at 1006.299 kb on + strand at 1006.299 kb on + strand at 1006.326 kb on + strand at 1006.520 kb on - strand at 1006.524 kb on + strand at 1006.552 kb on + strand at 1006.553 kb on - strand at 1006.600 kb on - strand at 1006.602 kb on + strand at 1006.603 kb on - strand at 1006.603 kb on - strand at 1006.633 kb on + strand at 1006.634 kb on - strand at 1006.671 kb on + strand at 1006.765 kb on + strand at 1006.765 kb on + strand at 1006.780 kb on + strand at 1007.079 kb on + strand, within BPHYT_RS04370 at 1007.566 kb on - strand at 1007.624 kb on + strand at 1007.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,005,939 + BPHYT_RS04365 0.67 +0.4 1,005,940 - BPHYT_RS04365 0.67 +1.0 1,005,940 - BPHYT_RS04365 0.67 -1.0 1,005,940 - BPHYT_RS04365 0.67 -0.1 1,006,030 + BPHYT_RS04365 0.74 +0.4 1,006,031 - BPHYT_RS04365 0.74 +0.2 1,006,299 + +0.2 1,006,299 + +0.5 1,006,326 + +0.8 1,006,520 - +0.1 1,006,524 + +1.0 1,006,552 + +0.2 1,006,553 - +0.1 1,006,600 - +0.4 1,006,602 + +0.4 1,006,603 - +0.1 1,006,603 - +0.3 1,006,633 + +0.2 1,006,634 - +0.1 1,006,671 + -0.1 1,006,765 + -0.8 1,006,765 + -0.5 1,006,780 + +0.8 1,007,079 + BPHYT_RS04370 0.35 +1.0 1,007,566 - +0.5 1,007,624 + +0.7 1,007,624 + +0.8
Or see this region's nucleotide sequence