Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01490 and BPHYT_RS01495 are separated by 107 nucleotides BPHYT_RS01495 and BPHYT_RS01500 are separated by 389 nucleotides BPHYT_RS01500 and BPHYT_RS01505 are separated by 62 nucleotides BPHYT_RS01505 and BPHYT_RS01510 are separated by 6 nucleotides
BPHYT_RS01490: BPHYT_RS01490 - XRE family transcriptional regulator, at 341,188 to 341,877
_RS01490
BPHYT_RS01495: BPHYT_RS01495 - tRNA-Phe, at 341,985 to 342,060
_RS01495
BPHYT_RS01500: BPHYT_RS01500 - 7-cyano-7-deazaguanine synthase, at 342,450 to 343,184
_RS01500
BPHYT_RS01505: BPHYT_RS01505 - 7-cyano-7-deazaguanine reductase, at 343,247 to 343,879
_RS01505
BPHYT_RS01510: BPHYT_RS01510 - 6-carboxy-5,6,7,8-tetrahydropterin synthase, at 343,886 to 344,332
_RS01510
Position (kb) 342
343
344 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 342.116 kb on - strand at 342.234 kb on - strand at 342.272 kb on + strand at 342.273 kb on - strand at 342.273 kb on - strand at 342.298 kb on + strand at 342.304 kb on + strand at 342.304 kb on + strand at 342.305 kb on - strand at 342.306 kb on + strand at 342.306 kb on + strand at 342.306 kb on + strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.307 kb on - strand at 342.343 kb on + strand at 342.343 kb on + strand at 342.344 kb on - strand at 342.345 kb on + strand at 342.346 kb on - strand at 342.346 kb on - strand at 342.346 kb on - strand at 342.473 kb on + strand at 342.540 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.559 kb on + strand, within BPHYT_RS01500 at 342.560 kb on - strand, within BPHYT_RS01500 at 342.560 kb on - strand, within BPHYT_RS01500 at 342.570 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.671 kb on + strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.672 kb on - strand, within BPHYT_RS01500 at 342.935 kb on + strand, within BPHYT_RS01500 at 342.935 kb on + strand, within BPHYT_RS01500 at 342.936 kb on - strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.049 kb on + strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.050 kb on - strand, within BPHYT_RS01500 at 343.056 kb on + strand, within BPHYT_RS01500 at 343.056 kb on + strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.057 kb on - strand, within BPHYT_RS01500 at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.147 kb on - strand at 343.253 kb on + strand at 343.275 kb on - strand at 343.436 kb on + strand, within BPHYT_RS01505 at 343.437 kb on - strand, within BPHYT_RS01505 at 343.731 kb on - strand, within BPHYT_RS01505 at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.862 kb on + strand at 343.863 kb on - strand at 343.957 kb on + strand, within BPHYT_RS01510 at 343.958 kb on - strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.976 kb on + strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 343.977 kb on - strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.117 kb on + strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.118 kb on - strand, within BPHYT_RS01510 at 344.128 kb on + strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510 at 344.129 kb on - strand, within BPHYT_RS01510
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 342,116 - -0.4 342,234 - -1.5 342,272 + +0.3 342,273 - -2.9 342,273 - -1.9 342,298 + +1.1 342,304 + -0.2 342,304 + -0.7 342,305 - -1.6 342,306 + +0.3 342,306 + +0.7 342,306 + -2.4 342,307 - -1.5 342,307 - +0.5 342,307 - -2.0 342,307 - -1.4 342,307 - -0.9 342,343 + +1.0 342,343 + -0.2 342,344 - +0.3 342,345 + -0.3 342,346 - +1.2 342,346 - -2.4 342,346 - -1.9 342,473 + -2.0 342,540 + BPHYT_RS01500 0.12 -0.2 342,559 + BPHYT_RS01500 0.15 -3.2 342,559 + BPHYT_RS01500 0.15 -2.8 342,559 + BPHYT_RS01500 0.15 -1.2 342,559 + BPHYT_RS01500 0.15 -1.8 342,560 - BPHYT_RS01500 0.15 -3.2 342,560 - BPHYT_RS01500 0.15 -0.6 342,570 + BPHYT_RS01500 0.16 -2.4 342,671 + BPHYT_RS01500 0.30 -1.2 342,671 + BPHYT_RS01500 0.30 -0.7 342,671 + BPHYT_RS01500 0.30 -0.7 342,671 + BPHYT_RS01500 0.30 -1.2 342,671 + BPHYT_RS01500 0.30 -2.4 342,671 + BPHYT_RS01500 0.30 -2.3 342,672 - BPHYT_RS01500 0.30 -3.5 342,672 - BPHYT_RS01500 0.30 -2.9 342,672 - BPHYT_RS01500 0.30 -0.9 342,935 + BPHYT_RS01500 0.66 -2.5 342,935 + BPHYT_RS01500 0.66 -1.2 342,936 - BPHYT_RS01500 0.66 -1.6 343,049 + BPHYT_RS01500 0.81 -2.6 343,049 + BPHYT_RS01500 0.81 -3.3 343,049 + BPHYT_RS01500 0.81 -3.0 343,049 + BPHYT_RS01500 0.81 -2.3 343,049 + BPHYT_RS01500 0.81 -2.7 343,049 + BPHYT_RS01500 0.81 -2.9 343,049 + BPHYT_RS01500 0.81 -1.5 343,050 - BPHYT_RS01500 0.82 +0.1 343,050 - BPHYT_RS01500 0.82 -1.3 343,050 - BPHYT_RS01500 0.82 -1.2 343,050 - BPHYT_RS01500 0.82 -3.8 343,050 - BPHYT_RS01500 0.82 -2.5 343,050 - BPHYT_RS01500 0.82 -2.2 343,050 - BPHYT_RS01500 0.82 -2.5 343,056 + BPHYT_RS01500 0.82 -2.6 343,056 + BPHYT_RS01500 0.82 -0.2 343,057 - BPHYT_RS01500 0.83 -2.0 343,057 - BPHYT_RS01500 0.83 -2.3 343,057 - BPHYT_RS01500 0.83 -2.2 343,057 - BPHYT_RS01500 0.83 -1.8 343,057 - BPHYT_RS01500 0.83 -2.6 343,057 - BPHYT_RS01500 0.83 -1.3 343,146 + -2.3 343,146 + -1.9 343,146 + -2.2 343,146 + -3.2 343,146 + +0.8 343,146 + -3.4 343,147 - -3.2 343,253 + -0.7 343,275 - -0.4 343,436 + BPHYT_RS01505 0.30 +0.0 343,437 - BPHYT_RS01505 0.30 -1.5 343,731 - BPHYT_RS01505 0.76 -2.0 343,862 + -1.5 343,862 + -1.7 343,862 + -1.8 343,862 + -3.4 343,862 + -1.6 343,863 - -3.4 343,957 + BPHYT_RS01510 0.16 +0.9 343,958 - BPHYT_RS01510 0.16 -0.5 343,976 + BPHYT_RS01510 0.20 -2.0 343,976 + BPHYT_RS01510 0.20 -1.4 343,976 + BPHYT_RS01510 0.20 -1.7 343,976 + BPHYT_RS01510 0.20 -0.1 343,977 - BPHYT_RS01510 0.20 -2.3 343,977 - BPHYT_RS01510 0.20 -2.6 343,977 - BPHYT_RS01510 0.20 -1.5 343,977 - BPHYT_RS01510 0.20 -2.7 343,977 - BPHYT_RS01510 0.20 -1.6 344,117 + BPHYT_RS01510 0.52 -0.7 344,117 + BPHYT_RS01510 0.52 -1.9 344,118 - BPHYT_RS01510 0.52 -2.0 344,118 - BPHYT_RS01510 0.52 +0.9 344,128 + BPHYT_RS01510 0.54 -1.9 344,129 - BPHYT_RS01510 0.54 -0.6 344,129 - BPHYT_RS01510 0.54 -1.3
Or see this region's nucleotide sequence