Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01310 and BPHYT_RS01315 are separated by 37 nucleotides BPHYT_RS01315 and BPHYT_RS01320 are separated by 2 nucleotides
BPHYT_RS01310: BPHYT_RS01310 - L-lysine 6-monooxygenase, at 299,503 to 300,828
_RS01310
BPHYT_RS01315: BPHYT_RS01315 - cupin, at 300,866 to 301,234
_RS01315
BPHYT_RS01320: BPHYT_RS01320 - FAD dependent oxidoreductase, at 301,237 to 302,298
_RS01320
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 300.011 kb on + strand, within BPHYT_RS01310 at 300.025 kb on + strand, within BPHYT_RS01310 at 300.026 kb on - strand, within BPHYT_RS01310 at 300.209 kb on - strand, within BPHYT_RS01310 at 300.209 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.211 kb on - strand, within BPHYT_RS01310 at 300.221 kb on - strand, within BPHYT_RS01310 at 300.221 kb on - strand, within BPHYT_RS01310 at 300.229 kb on + strand, within BPHYT_RS01310 at 300.230 kb on - strand, within BPHYT_RS01310 at 300.230 kb on - strand, within BPHYT_RS01310 at 300.321 kb on + strand, within BPHYT_RS01310 at 300.325 kb on + strand, within BPHYT_RS01310 at 300.440 kb on + strand, within BPHYT_RS01310 at 300.516 kb on + strand, within BPHYT_RS01310 at 300.516 kb on + strand, within BPHYT_RS01310 at 300.590 kb on - strand, within BPHYT_RS01310 at 300.629 kb on - strand, within BPHYT_RS01310 at 300.736 kb on + strand at 300.826 kb on + strand at 300.826 kb on + strand at 300.826 kb on + strand at 300.826 kb on + strand at 300.827 kb on - strand at 300.950 kb on - strand, within BPHYT_RS01315 at 301.152 kb on + strand, within BPHYT_RS01315 at 301.277 kb on + strand at 301.310 kb on + strand at 301.311 kb on - strand at 301.562 kb on + strand, within BPHYT_RS01320 at 301.724 kb on + strand, within BPHYT_RS01320 at 301.724 kb on + strand at 301.724 kb on + strand, within BPHYT_RS01320 at 301.725 kb on - strand, within BPHYT_RS01320 at 301.725 kb on - strand, within BPHYT_RS01320 at 301.725 kb on - strand, within BPHYT_RS01320 at 301.725 kb on - strand, within BPHYT_RS01320 at 301.734 kb on - strand, within BPHYT_RS01320 at 301.734 kb on - strand, within BPHYT_RS01320 at 301.734 kb on - strand, within BPHYT_RS01320 at 301.776 kb on + strand, within BPHYT_RS01320 at 301.776 kb on + strand, within BPHYT_RS01320 at 301.785 kb on - strand, within BPHYT_RS01320 at 301.785 kb on - strand, within BPHYT_RS01320 at 301.785 kb on - strand, within BPHYT_RS01320 at 301.976 kb on - strand, within BPHYT_RS01320 at 301.976 kb on - strand, within BPHYT_RS01320 at 302.110 kb on + strand, within BPHYT_RS01320 at 302.164 kb on + strand, within BPHYT_RS01320 at 302.164 kb on + strand, within BPHYT_RS01320 at 302.165 kb on - strand, within BPHYT_RS01320
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 300,011 + BPHYT_RS01310 0.38 +1.8 300,025 + BPHYT_RS01310 0.39 +0.8 300,026 - BPHYT_RS01310 0.39 +0.3 300,209 - BPHYT_RS01310 0.53 +1.8 300,209 - BPHYT_RS01310 0.53 +0.4 300,211 - BPHYT_RS01310 0.53 -0.2 300,211 - BPHYT_RS01310 0.53 -0.9 300,211 - BPHYT_RS01310 0.53 -0.9 300,221 - BPHYT_RS01310 0.54 +0.4 300,221 - BPHYT_RS01310 0.54 -0.9 300,229 + BPHYT_RS01310 0.55 -1.0 300,230 - BPHYT_RS01310 0.55 -0.5 300,230 - BPHYT_RS01310 0.55 -0.2 300,321 + BPHYT_RS01310 0.62 +1.0 300,325 + BPHYT_RS01310 0.62 -1.1 300,440 + BPHYT_RS01310 0.71 -1.3 300,516 + BPHYT_RS01310 0.76 -2.6 300,516 + BPHYT_RS01310 0.76 +1.4 300,590 - BPHYT_RS01310 0.82 +0.1 300,629 - BPHYT_RS01310 0.85 +0.8 300,736 + +0.2 300,826 + -0.9 300,826 + +0.6 300,826 + +0.1 300,826 + -0.5 300,827 - +0.0 300,950 - BPHYT_RS01315 0.23 +0.5 301,152 + BPHYT_RS01315 0.78 +1.4 301,277 + -0.1 301,310 + -0.7 301,311 - +0.5 301,562 + BPHYT_RS01320 0.31 -0.1 301,724 + BPHYT_RS01320 0.46 +0.0 301,724 + +5.2 301,724 + BPHYT_RS01320 0.46 -0.4 301,725 - BPHYT_RS01320 0.46 +0.9 301,725 - BPHYT_RS01320 0.46 -0.3 301,725 - BPHYT_RS01320 0.46 +1.6 301,725 - BPHYT_RS01320 0.46 +0.8 301,734 - BPHYT_RS01320 0.47 -1.5 301,734 - BPHYT_RS01320 0.47 -0.3 301,734 - BPHYT_RS01320 0.47 +0.1 301,776 + BPHYT_RS01320 0.51 +0.4 301,776 + BPHYT_RS01320 0.51 +0.5 301,785 - BPHYT_RS01320 0.52 -1.6 301,785 - BPHYT_RS01320 0.52 -0.0 301,785 - BPHYT_RS01320 0.52 -0.4 301,976 - BPHYT_RS01320 0.70 -0.7 301,976 - BPHYT_RS01320 0.70 -0.6 302,110 + BPHYT_RS01320 0.82 -1.0 302,164 + BPHYT_RS01320 0.87 +0.5 302,164 + BPHYT_RS01320 0.87 -2.3 302,165 - BPHYT_RS01320 0.87 -0.9
Or see this region's nucleotide sequence