Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS00100

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS00095 and BPHYT_RS00100 are separated by 280 nucleotidesBPHYT_RS00100 and BPHYT_RS00105 are separated by 43 nucleotides BPHYT_RS00095: BPHYT_RS00095 - AraC family transcriptional regulator, at 28,838 to 29,704 _RS00095 BPHYT_RS00100: BPHYT_RS00100 - ethanolamine permease, at 29,985 to 31,388 _RS00100 BPHYT_RS00105: BPHYT_RS00105 - ethanolamine ammonia lyase large subunit, at 31,432 to 32,826 _RS00105 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 28.997 kb on - strand, within BPHYT_RS00095at 28.998 kb on + strand, within BPHYT_RS00095at 28.998 kb on + strand, within BPHYT_RS00095at 28.999 kb on - strand, within BPHYT_RS00095at 29.245 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.247 kb on + strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.248 kb on - strand, within BPHYT_RS00095at 29.280 kb on - strand, within BPHYT_RS00095at 29.376 kb on + strand, within BPHYT_RS00095at 29.527 kb on + strand, within BPHYT_RS00095at 29.559 kb on + strand, within BPHYT_RS00095at 29.559 kb on + strand, within BPHYT_RS00095at 29.560 kb on - strand, within BPHYT_RS00095at 29.578 kb on - strand, within BPHYT_RS00095at 29.640 kb on + strandat 29.640 kb on + strandat 29.641 kb on - strandat 29.690 kb on - strandat 29.744 kb on + strandat 29.784 kb on + strandat 29.835 kb on + strandat 30.118 kb on - strandat 30.180 kb on + strand, within BPHYT_RS00100at 30.181 kb on - strand, within BPHYT_RS00100at 30.181 kb on - strand, within BPHYT_RS00100at 30.182 kb on + strand, within BPHYT_RS00100at 30.221 kb on + strand, within BPHYT_RS00100at 30.409 kb on - strand, within BPHYT_RS00100at 30.826 kb on - strand, within BPHYT_RS00100at 30.857 kb on + strand, within BPHYT_RS00100at 30.857 kb on + strand, within BPHYT_RS00100at 30.858 kb on - strand, within BPHYT_RS00100at 31.047 kb on + strand, within BPHYT_RS00100at 31.131 kb on + strand, within BPHYT_RS00100at 31.132 kb on - strand, within BPHYT_RS00100at 31.132 kb on - strand, within BPHYT_RS00100at 31.133 kb on + strand, within BPHYT_RS00100at 31.134 kb on - strand, within BPHYT_RS00100at 31.439 kb on - strandat 31.768 kb on - strand, within BPHYT_RS00105at 31.979 kb on - strand, within BPHYT_RS00105at 32.236 kb on + strand, within BPHYT_RS00105at 32.237 kb on - strand, within BPHYT_RS00105at 32.287 kb on + strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.288 kb on - strand, within BPHYT_RS00105at 32.360 kb on + strand, within BPHYT_RS00105at 32.361 kb on - strand, within BPHYT_RS00105at 32.368 kb on + strand, within BPHYT_RS00105

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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28,997 - BPHYT_RS00095 0.18 +0.5
28,998 + BPHYT_RS00095 0.18 +0.2
28,998 + BPHYT_RS00095 0.18 -1.2
28,999 - BPHYT_RS00095 0.19 -0.4
29,245 + BPHYT_RS00095 0.47 -3.4
29,247 + BPHYT_RS00095 0.47 -0.5
29,247 + BPHYT_RS00095 0.47 -0.9
29,247 + BPHYT_RS00095 0.47 -0.5
29,248 - BPHYT_RS00095 0.47 -0.4
29,248 - BPHYT_RS00095 0.47 -0.3
29,248 - BPHYT_RS00095 0.47 -0.8
29,248 - BPHYT_RS00095 0.47 +0.0
29,280 - BPHYT_RS00095 0.51 +0.8
29,376 + BPHYT_RS00095 0.62 +0.8
29,527 + BPHYT_RS00095 0.79 +0.8
29,559 + BPHYT_RS00095 0.83 -0.8
29,559 + BPHYT_RS00095 0.83 -0.8
29,560 - BPHYT_RS00095 0.83 -0.4
29,578 - BPHYT_RS00095 0.85 +0.9
29,640 + -0.3
29,640 + -1.1
29,641 - -0.0
29,690 - -0.6
29,744 + +2.8
29,784 + +0.6
29,835 + -0.3
30,118 - +0.0
30,180 + BPHYT_RS00100 0.14 -0.2
30,181 - BPHYT_RS00100 0.14 -0.2
30,181 - BPHYT_RS00100 0.14 -0.1
30,182 + BPHYT_RS00100 0.14 -0.1
30,221 + BPHYT_RS00100 0.17 +0.4
30,409 - BPHYT_RS00100 0.30 -1.5
30,826 - BPHYT_RS00100 0.60 +0.8
30,857 + BPHYT_RS00100 0.62 +0.3
30,857 + BPHYT_RS00100 0.62 +0.8
30,858 - BPHYT_RS00100 0.62 -1.7
31,047 + BPHYT_RS00100 0.76 +1.2
31,131 + BPHYT_RS00100 0.82 +0.8
31,132 - BPHYT_RS00100 0.82 +1.0
31,132 - BPHYT_RS00100 0.82 -2.1
31,133 + BPHYT_RS00100 0.82 -1.1
31,134 - BPHYT_RS00100 0.82 -0.3
31,439 - -0.7
31,768 - BPHYT_RS00105 0.24 -0.2
31,979 - BPHYT_RS00105 0.39 -1.6
32,236 + BPHYT_RS00105 0.58 -0.3
32,237 - BPHYT_RS00105 0.58 +0.8
32,287 + BPHYT_RS00105 0.61 -0.2
32,288 - BPHYT_RS00105 0.61 -0.2
32,288 - BPHYT_RS00105 0.61 -0.7
32,360 + BPHYT_RS00105 0.67 -0.5
32,361 - BPHYT_RS00105 0.67 -0.2
32,368 + BPHYT_RS00105 0.67 +0.1

Or see this region's nucleotide sequence