Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS31435

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
1,455,122	+				-0.3
1,455,122	+				-0.0
1,455,122	+				+0.2
1,455,122	+				-1.2
1,455,122	+				+2.6
1,455,123	-				-1.9
1,455,123	-				+0.6
1,455,123	-				-1.4
1,455,123	-				-0.2
1,455,123	-				-2.5
1,455,228	+				+1.6
1,455,228	+				+1.2
1,455,233	+				+0.9
1,455,351	+				-1.5
1,455,352	-				-2.5
1,455,352	-				-1.0
1,455,352	-				-1.0
1,455,398	+				+2.4
1,455,398	+				-0.5
1,455,399	-				-0.4
1,455,506	+		PFLU_RS06500	0.22	-1.5
1,455,506	+		PFLU_RS06500	0.22	+1.0
1,455,506	+		PFLU_RS06500	0.22	-2.6
1,455,506	+		PFLU_RS06500	0.22	-1.9
1,455,506	+		PFLU_RS06500	0.22	-1.4
1,455,506	+		PFLU_RS06500	0.22	-3.4
1,455,507	-		PFLU_RS06500	0.23	-0.2
1,455,507	-		PFLU_RS06500	0.23	-1.5
1,455,507	-		PFLU_RS06500	0.23	-1.5
1,455,507	-		PFLU_RS06500	0.23	+0.4
1,455,507	-		PFLU_RS06500	0.23	+1.7
1,455,530	+		PFLU_RS06500	0.26	+0.3
1,455,530	+		PFLU_RS06500	0.26	-0.5
1,455,530	+		PFLU_RS06500	0.26	-0.5
1,455,530	+		PFLU_RS06500	0.26	-0.3
1,455,530	+		PFLU_RS06500	0.26	-0.5
1,455,530	+		PFLU_RS06500	0.26	-2.3
1,455,530	+		PFLU_RS06500	0.26	+1.5
1,455,530	+		PFLU_RS06500	0.26	-0.8
1,455,531	-		PFLU_RS06500	0.26	-1.5
1,455,531	-		PFLU_RS06500	0.26	+1.2
1,455,531	-		PFLU_RS06500	0.26	-2.0
1,455,531	-		PFLU_RS06500	0.26	+2.2
1,455,531	-		PFLU_RS06500	0.26	+0.6
1,455,531	-		PFLU_RS06500	0.26	+1.7
1,455,531	-		PFLU_RS06500	0.26	-1.5
1,455,585	-		PFLU_RS06500	0.35	-2.4
1,455,608	+		PFLU_RS06500	0.38	-1.9
1,455,608	+		PFLU_RS06500	0.38	+1.3
1,455,608	+		PFLU_RS06500	0.38	-1.4
1,455,609	-		PFLU_RS06500	0.38	-1.4
1,455,609	-		PFLU_RS06500	0.38	+2.4
1,455,609	-		PFLU_RS06500	0.38	-0.8
1,455,609	-		PFLU_RS06500	0.38	-0.2
1,455,609	-		PFLU_RS06500	0.38	+0.4
1,455,609	-		PFLU_RS06500	0.38	-0.0
1,455,609	-		PFLU_RS06500	0.38	+1.8
1,455,773	+		PFLU_RS06500	0.64	-0.2
1,455,773	+		PFLU_RS06500	0.64	+1.9
1,455,774	-		PFLU_RS06500	0.64	+0.3
1,455,909	+		PFLU_RS06500	0.85	-2.6
1,455,909	+		PFLU_RS06500	0.85	+0.6
1,455,909	+		PFLU_RS06500	0.85	+2.0
1,455,927	+		PFLU_RS06500	0.88	-2.7
1,455,927	+		PFLU_RS06500	0.88	-2.0
1,455,927	+		PFLU_RS06500	0.88	-1.0
1,455,927	+		PFLU_RS06500	0.88	+3.8
1,455,927	+		PFLU_RS06500	0.88	-3.0
1,455,927	+		PFLU_RS06500	0.88	-1.8
1,455,927	+		PFLU_RS06500	0.88	-1.7
1,455,928	-		PFLU_RS06500	0.88	-1.5
1,455,928	-		PFLU_RS06500	0.88	-1.8
1,455,928	-		PFLU_RS06500	0.88	+2.4
1,455,928	-		PFLU_RS06500	0.88	-0.7
1,455,928	-		PFLU_RS06500	0.88	+0.8
1,455,928	-		PFLU_RS06500	0.88	+0.4
1,455,928	-		PFLU_RS06500	0.88	-2.5
1,455,929	+		PFLU_RS06500	0.88	-1.7
1,455,929	+		PFLU_RS06500	0.88	+0.3
1,455,929	+		PFLU_RS06500	0.88	+2.1
1,455,929	+		PFLU_RS06500	0.88	-0.0
1,455,929	+		PFLU_RS06500	0.88	-3.5
1,455,929	+		PFLU_RS06500	0.88	-0.2
1,455,929	+		PFLU_RS06500	0.88	+0.9
1,455,929	+		PFLU_RS06500	0.88	+0.8
1,455,929	+		PFLU_RS06500	0.88	-2.3
1,455,929	+		PFLU_RS06500	0.88	+0.8
1,455,929	+		PFLU_RS06500	0.88	-0.9
1,455,929	+		PFLU_RS06500	0.88	+0.8
1,455,930	-		PFLU_RS06500	0.88	+1.8
1,455,930	-		PFLU_RS06500	0.88	-1.4
1,455,930	-		PFLU_RS06500	0.88	+0.8
1,455,930	-		PFLU_RS06500	0.88	+0.8
1,455,930	-		PFLU_RS06500	0.88	-0.2
1,455,930	-		PFLU_RS06500	0.88	+2.0
1,455,930	-		PFLU_RS06500	0.88	+0.8
1,455,930	-		PFLU_RS06500	0.88	+1.5
1,455,961	+				-2.8
1,455,961	+				+0.3
1,455,961	+				+1.8
1,455,961	+				+1.4
1,455,962	-				+0.1
1,455,962	-				+0.2
1,455,962	-				-2.1
1,455,962	-				+1.4
1,455,962	-				+1.0
1,455,962	-				+1.4
1,455,962	-				+1.8
1,455,962	-				-2.5
1,455,962	-				+0.8
1,455,962	-				+2.4
1,455,962	-				+0.5
1,455,962	-				-1.9
1,455,962	-				-0.8
1,455,962	-				+1.4
1,455,962	-				+1.8
1,455,989	+				-1.4
1,455,989	+				-0.9
1,455,992	+				+0.5
1,455,992	+				+0.5
1,455,992	+				+1.8
1,455,992	+				+1.5
1,455,992	+				-1.2
1,455,992	+				-0.0
1,455,992	+				-1.9
1,455,992	+				-1.3
1,455,992	+				-1.7
1,455,992	+				+0.3
1,455,992	+				+0.1
1,455,992	+				-0.2
1,455,992	+				+1.6
1,455,992	+				+2.2
1,455,992	+				+1.1
1,455,992	+				+3.4
1,455,992	+				+2.4
1,455,992	+				+2.1
1,455,992	+				-2.6
1,455,992	+				-0.5
1,455,992	+				-2.5
1,455,993	-				+1.5
1,455,993	-				+0.4
1,455,993	-				-3.3
1,455,993	-				-1.0
1,455,993	-				+1.8
1,455,993	-				-2.8
1,455,993	-				-0.3
1,455,993	-				-2.9
1,455,993	-				-1.9
1,455,993	-				-1.8
1,455,993	-				+2.1
1,455,993	-				-1.9
1,455,993	-				-0.2
1,455,993	-				-0.2
1,455,993	-				-0.5
1,455,993	-				-1.2
1,455,993	-				+1.0
1,456,045	+				+0.1
1,456,045	+				+0.0
1,456,045	+				-3.5
1,456,045	+				-2.1
1,456,045	+				-2.2
1,456,045	+				-2.1
1,456,045	+				-0.8
1,456,045	+				-0.2
1,456,045	+				-0.9
1,456,045	+				-2.0
1,456,046	-				-0.5
1,456,046	-				+1.6
1,456,046	-				+0.2
1,456,046	-				+0.9
1,456,046	-				-1.0
1,456,046	-				-3.0
1,456,046	-				-1.0
1,456,046	-				+0.5
1,456,046	-				-0.4
1,456,046	-				-2.3
1,456,048	-				+0.9
1,456,049	+				+0.8
1,456,049	+				-1.4
1,456,049	+				-3.1
1,456,049	+				-3.0
1,456,049	+				+1.6
1,456,049	+				+0.8
1,456,049	+				-0.5
1,456,049	+				-0.8
1,456,049	+				+0.5
1,456,049	+				-0.2
1,456,049	+				+1.2
1,456,049	+				-2.1
1,456,049	+				-1.8
1,456,049	+				+1.3
1,456,049	+				-2.4
1,456,049	+				-1.2
1,456,049	+				-0.5
1,456,049	+				-0.5
1,456,049	+				-2.3
1,456,049	+				+0.9
1,456,050	-				+2.0
1,456,050	-				+1.1
1,456,050	-				+0.8
1,456,050	-				+1.8
1,456,050	-				-2.0
1,456,050	-				+0.9
1,456,050	-				+1.8
1,456,050	-				+0.4
1,456,050	-				-0.8
1,456,050	-				-0.5
1,456,050	-				+0.2
1,456,050	-				-0.3
1,456,050	-				+2.0
1,456,050	-				-1.5
1,456,050	-				-0.5
1,456,050	-				+0.2
1,456,050	-				-2.9
1,456,050	-				-0.8
1,456,051	+				-1.1
1,456,051	+				-0.1
1,456,051	+				-0.5
1,456,051	+				-2.2
1,456,051	+				-2.4
1,456,051	+				+2.3
1,456,051	+				+1.2
1,456,051	+				+0.0
1,456,051	+				-1.7
1,456,051	+				+0.4
1,456,051	+				-3.0
1,456,051	+				+0.7
1,456,051	+				+0.5
1,456,051	+				+1.3
1,456,051	+				-0.2
1,456,051	+				-0.2
1,456,051	+				+0.4
1,456,051	+				+0.2
1,456,051	+				-0.0
1,456,051	+				+2.8
1,456,051	+				+2.0
1,456,051	+				-2.9
1,456,051	+				+1.2
1,456,051	+				-0.8
1,456,051	+				+0.5
1,456,051	+				-2.9
1,456,051	+				-0.5
1,456,051	+				+0.5
1,456,051	+				+1.1
1,456,051	+				+1.0
1,456,051	+				+1.2
1,456,051	+				-1.3
1,456,052	-				+2.3
1,456,052	-				-0.3
1,456,052	-				-0.9
1,456,052	-				+0.9
1,456,052	-				-0.3
1,456,052	-				+0.6
1,456,052	-				-1.1
1,456,052	-				+0.6
1,456,052	-				+0.9
1,456,052	-				+0.2
1,456,052	-				+2.0
1,456,052	-				+0.2
1,456,052	-				+0.6
1,456,052	-				-0.8
1,456,052	-				+1.8
1,456,052	-				-2.5
1,456,052	-				+0.4
1,456,052	-				+0.5
1,456,052	-				+0.6
1,456,052	-				+0.9
1,456,052	-				-3.2
1,456,052	-				-2.2
1,456,052	-				-0.5
1,456,052	-				+0.9
1,456,052	-				-0.5
1,456,052	-				-0.8
1,456,052	-				-0.2
1,456,052	-				-1.0
1,456,052	-				-1.2
1,456,052	-				+1.4
1,456,052	-				+1.1
1,456,052	-				-3.2
1,456,055	+				+0.8
1,456,055	+				-1.4
1,456,055	+				-0.5
1,456,055	+				-2.0
1,456,055	+				-0.5
1,456,055	+				-1.5
1,456,055	+				-2.3
1,456,055	+				-0.5
1,456,055	+				-0.2
1,456,055	+				+0.5
1,456,055	+				-0.2
1,456,055	+				+0.9
1,456,055	+				+1.8
1,456,055	+				-0.5
1,456,055	+				-0.5
1,456,055	+				-2.0
1,456,055	+				-2.5
1,456,055	+				-1.7
1,456,055	+				+2.4
1,456,055	+				-1.0
1,456,055	+				-2.4
1,456,056	-				+1.8
1,456,056	-				-0.5
1,456,056	-				-1.2
1,456,056	-				-1.2
1,456,056	-				-2.3
1,456,056	-				-2.1
1,456,056	-				+3.1
1,456,056	-				+1.4
1,456,056	-				-1.7
1,456,056	-				+1.2
1,456,056	-				-0.8
1,456,056	-				-1.0
1,456,056	-				-1.8
1,456,056	-				-2.1
1,456,056	-				+0.2
1,456,056	-				+1.9
1,456,056	-				-0.5
1,456,056	-				+0.5
1,456,056	-				-2.0
1,456,056	-				-2.5
1,456,056	-				+1.8
1,456,056	-				+2.0
1,456,095	+				+0.8
1,456,101	+				-0.3
1,456,101	+				+1.0
1,456,101	+				-2.1
1,456,101	+				+1.2
1,456,101	+				+1.0
1,456,102	-				-1.8
1,456,102	-				-0.5
1,456,102	-				+2.7
1,456,181	+		PFLU_RS31435	0.67	+1.0
1,456,181	+		PFLU_RS31435	0.67	-1.8
1,456,181	+		PFLU_RS31435	0.67	+4.1
1,456,181	+		PFLU_RS31435	0.67	+2.2
1,456,181	+		PFLU_RS31435	0.67	-0.0
1,456,181	+		PFLU_RS31435	0.67	-1.4
1,456,182	-		PFLU_RS31435	0.68	-0.4
1,456,182	-		PFLU_RS31435	0.68	+0.8
1,456,182	-		PFLU_RS31435	0.68	+1.4
1,456,182	-		PFLU_RS31435	0.68	+0.2
1,456,182	-		PFLU_RS31435	0.68	+2.6
1,456,182	-		PFLU_RS31435	0.68	-1.7
1,456,182	-		PFLU_RS31435	0.68	+0.5
1,456,182	-		PFLU_RS31435	0.68	+0.2
1,456,182	-		PFLU_RS31435	0.68	+1.8
1,456,313	-				-0.5
1,456,313	-				-2.3
1,456,313	-				+1.6
1,456,313	-				+3.0
1,456,457	+				-0.6
1,456,458	-				+0.1
1,456,458	-				+0.1
1,456,458	-				-0.2
1,456,473	+				-0.5
1,456,474	-				+1.8
1,456,705	+				-1.2
1,456,705	+				-2.5
1,456,705	+				+0.1
1,456,705	+				-0.8
1,456,706	-				+1.1
1,456,706	-				+0.8
1,456,706	-				-2.8
1,456,736	+		PFLU_RS06510	0.14	-1.9
1,456,747	+		PFLU_RS06510	0.16	+2.7
1,456,747	+		PFLU_RS06510	0.16	+0.6
1,456,747	+		PFLU_RS06510	0.16	+0.5
1,456,747	+		PFLU_RS06510	0.16	-2.6
1,456,748	-		PFLU_RS06510	0.16	+0.4
1,456,748	-		PFLU_RS06510	0.16	-2.9
1,456,748	-		PFLU_RS06510	0.16	-0.2
1,456,748	-		PFLU_RS06510	0.16	+0.2
1,456,842	+		PFLU_RS06510	0.36	-3.5
1,456,842	+		PFLU_RS06510	0.36	-1.9
1,456,843	-		PFLU_RS06510	0.36	-0.6
1,456,843	-		PFLU_RS06510	0.36	+0.8
1,456,843	-		PFLU_RS06510	0.36	+0.9
1,456,869	+		PFLU_RS06510	0.41	-2.5
1,456,869	+		PFLU_RS06510	0.41	+1.9
1,456,870	-		PFLU_RS06510	0.42	+1.9
1,456,870	-		PFLU_RS06510	0.42	+0.2
1,456,870	-		PFLU_RS06510	0.42	+0.7
1,456,870	-		PFLU_RS06510	0.42	+1.6
1,456,870	-		PFLU_RS06510	0.42	-2.0
1,456,946	+		PFLU_RS06510	0.57	-0.2
1,456,946	+		PFLU_RS06510	0.57	+1.8
1,456,946	+		PFLU_RS06510	0.57	-1.9
1,456,946	+		PFLU_RS06510	0.57	-0.5
1,456,946	+		PFLU_RS06510	0.57	-3.3
1,456,946	+		PFLU_RS06510	0.57	+0.1
1,456,946	+		PFLU_RS06510	0.57	-2.6
1,456,946	+		PFLU_RS06510	0.57	+0.5
1,456,946	+		PFLU_RS06510	0.57	+0.7
1,456,946	+		PFLU_RS06510	0.57	+1.0
1,456,946	+		PFLU_RS06510	0.57	+2.9
1,456,947	-		PFLU_RS06510	0.58	-1.5
1,456,947	-		PFLU_RS06510	0.58	-2.2
1,456,947	-		PFLU_RS06510	0.58	-0.1
1,456,947	-		PFLU_RS06510	0.58	-0.1
1,456,947	-		PFLU_RS06510	0.58	+1.8
1,456,947	-		PFLU_RS06510	0.58	-2.5
1,457,000	+		PFLU_RS06510	0.69	+0.2
1,457,000	+		PFLU_RS06510	0.69	+0.2
1,457,001	-		PFLU_RS06510	0.69	+0.0
1,457,001	-		PFLU_RS06510	0.69	-3.1
1,457,138	+				-2.5
1,457,138	+				-1.4
1,457,138	+				+1.1
1,457,138	+				-2.1
1,457,138	+				+0.4
1,457,138	+				-1.0
1,457,138	+				-1.9
1,457,138	+				+1.3
1,457,138	+				+0.4
1,457,138	+				-0.8
1,457,138	+				+0.6
1,457,138	+				-2.9
1,457,138	+				+1.8
1,457,138	+				+1.3
1,457,139	-				-3.0
1,457,139	-				-1.5
1,457,139	-				-1.2
1,457,139	-				+1.8
1,457,139	-				+1.9
1,457,139	-				-0.5
1,457,139	-				-0.4
1,457,139	-				-2.1
1,457,139	-				+0.3
1,457,173	-				+1.2
1,457,178	+				-0.1
1,457,178	+				-0.2
1,457,178	+				-0.8
1,457,178	+				-0.6
1,457,178	+				-1.4
1,457,178	+				+1.3
1,457,178	+				+1.0
1,457,178	+				+1.8
1,457,178	+				+1.2
1,457,178	+				-0.9
1,457,179	-				+2.1
1,457,179	-				-1.4
1,457,179	-				-2.5
1,457,179	-				-0.7
1,457,179	-				+2.4
1,457,179	-				+1.8
1,457,179	-				-0.5
1,457,179	-				-2.1