Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26690

Experiment: Choline chloride 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS26685 and PFLU_RS26690 overlap by 7 nucleotidesPFLU_RS26690 and PFLU_RS26695 are separated by 100 nucleotidesPFLU_RS26695 and PFLU_RS26700 are separated by 21 nucleotides PFLU_RS26685: PFLU_RS26685 - phosphatase PAP2 family protein, at 5,962,745 to 5,964,061 _RS26685 PFLU_RS26690: PFLU_RS26690 - hypothetical protein, at 5,964,055 to 5,964,270 _RS26690 PFLU_RS26695: PFLU_RS26695 - ATP-dependent protease, at 5,964,371 to 5,964,961 _RS26695 PFLU_RS26700: PFLU_RS26700 - LrgB family protein, at 5,964,983 to 5,965,699 _RS26700 Position (kb) 5964 5965Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.063 kb on + strand, within PFLU_RS26685at 5963.064 kb on - strand, within PFLU_RS26685at 5963.064 kb on - strand, within PFLU_RS26685at 5963.064 kb on - strand, within PFLU_RS26685at 5963.064 kb on - strand, within PFLU_RS26685at 5963.075 kb on + strand, within PFLU_RS26685at 5963.075 kb on + strand, within PFLU_RS26685at 5963.075 kb on + strand, within PFLU_RS26685at 5963.075 kb on + strand, within PFLU_RS26685at 5963.075 kb on + strand, within PFLU_RS26685at 5963.076 kb on - strand, within PFLU_RS26685at 5963.217 kb on - strand, within PFLU_RS26685at 5963.217 kb on - strand, within PFLU_RS26685at 5963.417 kb on + strand, within PFLU_RS26685at 5963.473 kb on + strand, within PFLU_RS26685at 5963.568 kb on + strand, within PFLU_RS26685at 5963.569 kb on - strand, within PFLU_RS26685at 5963.569 kb on - strand, within PFLU_RS26685at 5963.680 kb on + strand, within PFLU_RS26685at 5963.757 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.849 kb on + strand, within PFLU_RS26685at 5963.850 kb on - strand, within PFLU_RS26685at 5964.051 kb on - strandat 5964.051 kb on - strandat 5964.056 kb on + strandat 5964.056 kb on + strandat 5964.057 kb on - strandat 5964.057 kb on - strandat 5964.057 kb on - strandat 5964.057 kb on - strandat 5964.170 kb on + strand, within PFLU_RS26690at 5964.170 kb on + strand, within PFLU_RS26690at 5964.170 kb on + strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.171 kb on - strand, within PFLU_RS26690at 5964.306 kb on + strandat 5964.307 kb on - strandat 5964.307 kb on - strandat 5964.307 kb on - strandat 5964.347 kb on + strandat 5964.348 kb on - strandat 5964.348 kb on - strandat 5964.404 kb on + strandat 5964.405 kb on - strandat 5964.489 kb on + strand, within PFLU_RS26695at 5964.489 kb on + strand, within PFLU_RS26695at 5964.489 kb on + strand, within PFLU_RS26695at 5964.490 kb on - strand, within PFLU_RS26695at 5964.490 kb on - strand, within PFLU_RS26695at 5964.490 kb on - strand, within PFLU_RS26695at 5964.689 kb on + strand, within PFLU_RS26695at 5964.689 kb on + strand, within PFLU_RS26695at 5964.690 kb on - strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.806 kb on + strand, within PFLU_RS26695at 5964.807 kb on - strand, within PFLU_RS26695at 5964.807 kb on - strand, within PFLU_RS26695at 5964.883 kb on - strand, within PFLU_RS26695at 5964.935 kb on - strandat 5964.961 kb on + strandat 5964.961 kb on + strandat 5964.962 kb on - strandat 5964.962 kb on - strandat 5964.962 kb on - strandat 5964.962 kb on - strandat 5964.973 kb on + strandat 5964.973 kb on + strandat 5964.974 kb on - strandat 5964.984 kb on + strandat 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.173 kb on + strand, within PFLU_RS26700at 5965.174 kb on - strand, within PFLU_RS26700at 5965.174 kb on - strand, within PFLU_RS26700

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C)
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5,963,063 + PFLU_RS26685 0.24 -0.5
5,963,063 + PFLU_RS26685 0.24 -2.8
5,963,063 + PFLU_RS26685 0.24 -0.5
5,963,063 + PFLU_RS26685 0.24 +0.3
5,963,063 + PFLU_RS26685 0.24 +1.7
5,963,063 + PFLU_RS26685 0.24 -1.1
5,963,063 + PFLU_RS26685 0.24 -0.1
5,963,063 + PFLU_RS26685 0.24 -3.4
5,963,063 + PFLU_RS26685 0.24 +0.6
5,963,063 + PFLU_RS26685 0.24 -3.0
5,963,063 + PFLU_RS26685 0.24 +0.5
5,963,064 - PFLU_RS26685 0.24 +3.2
5,963,064 - PFLU_RS26685 0.24 -2.4
5,963,064 - PFLU_RS26685 0.24 -2.3
5,963,064 - PFLU_RS26685 0.24 -3.5
5,963,075 + PFLU_RS26685 0.25 -0.6
5,963,075 + PFLU_RS26685 0.25 +0.7
5,963,075 + PFLU_RS26685 0.25 +1.0
5,963,075 + PFLU_RS26685 0.25 -0.8
5,963,075 + PFLU_RS26685 0.25 +0.3
5,963,076 - PFLU_RS26685 0.25 -0.5
5,963,217 - PFLU_RS26685 0.36 +1.1
5,963,217 - PFLU_RS26685 0.36 -0.1
5,963,417 + PFLU_RS26685 0.51 -1.6
5,963,473 + PFLU_RS26685 0.55 -1.0
5,963,568 + PFLU_RS26685 0.62 +0.3
5,963,569 - PFLU_RS26685 0.63 -0.1
5,963,569 - PFLU_RS26685 0.63 +0.4
5,963,680 + PFLU_RS26685 0.71 +0.9
5,963,757 + PFLU_RS26685 0.77 +2.0
5,963,849 + PFLU_RS26685 0.84 +0.6
5,963,849 + PFLU_RS26685 0.84 +2.4
5,963,849 + PFLU_RS26685 0.84 -1.6
5,963,849 + PFLU_RS26685 0.84 -2.6
5,963,849 + PFLU_RS26685 0.84 +1.0
5,963,849 + PFLU_RS26685 0.84 +1.0
5,963,850 - PFLU_RS26685 0.84 -3.4
5,964,051 - -3.4
5,964,051 - -3.3
5,964,056 + +0.4
5,964,056 + -2.0
5,964,057 - +1.9
5,964,057 - -0.8
5,964,057 - +0.7
5,964,057 - -1.0
5,964,170 + PFLU_RS26690 0.53 -2.1
5,964,170 + PFLU_RS26690 0.53 +0.1
5,964,170 + PFLU_RS26690 0.53 +2.4
5,964,171 - PFLU_RS26690 0.54 -1.2
5,964,171 - PFLU_RS26690 0.54 +2.2
5,964,171 - PFLU_RS26690 0.54 -2.5
5,964,171 - PFLU_RS26690 0.54 +1.6
5,964,171 - PFLU_RS26690 0.54 -0.6
5,964,171 - PFLU_RS26690 0.54 +1.0
5,964,171 - PFLU_RS26690 0.54 +1.0
5,964,171 - PFLU_RS26690 0.54 +3.4
5,964,171 - PFLU_RS26690 0.54 +0.9
5,964,306 + -0.4
5,964,307 - -1.7
5,964,307 - -0.5
5,964,307 - +1.3
5,964,347 + -0.8
5,964,348 - -1.0
5,964,348 - -1.6
5,964,404 + +2.6
5,964,405 - -0.4
5,964,489 + PFLU_RS26695 0.20 -1.8
5,964,489 + PFLU_RS26695 0.20 -0.4
5,964,489 + PFLU_RS26695 0.20 +0.6
5,964,490 - PFLU_RS26695 0.20 -2.6
5,964,490 - PFLU_RS26695 0.20 -2.2
5,964,490 - PFLU_RS26695 0.20 +2.0
5,964,689 + PFLU_RS26695 0.54 +1.4
5,964,689 + PFLU_RS26695 0.54 +0.4
5,964,690 - PFLU_RS26695 0.54 -1.3
5,964,806 + PFLU_RS26695 0.74 -0.5
5,964,806 + PFLU_RS26695 0.74 +0.3
5,964,806 + PFLU_RS26695 0.74 -2.3
5,964,806 + PFLU_RS26695 0.74 -0.1
5,964,806 + PFLU_RS26695 0.74 -0.0
5,964,806 + PFLU_RS26695 0.74 +2.0
5,964,806 + PFLU_RS26695 0.74 +1.4
5,964,806 + PFLU_RS26695 0.74 +0.7
5,964,807 - PFLU_RS26695 0.74 +1.4
5,964,807 - PFLU_RS26695 0.74 -0.2
5,964,883 - PFLU_RS26695 0.87 -1.9
5,964,935 - -0.2
5,964,961 + +1.1
5,964,961 + -1.6
5,964,962 - -0.7
5,964,962 - -1.6
5,964,962 - +1.0
5,964,962 - -0.0
5,964,973 + +1.6
5,964,973 + +0.9
5,964,974 - -0.0
5,964,984 + +2.9
5,965,173 + PFLU_RS26700 0.26 -1.6
5,965,173 + PFLU_RS26700 0.26 +1.9
5,965,173 + PFLU_RS26700 0.26 -1.0
5,965,173 + PFLU_RS26700 0.26 -0.8
5,965,173 + PFLU_RS26700 0.26 +1.5
5,965,173 + PFLU_RS26700 0.26 -0.0
5,965,173 + PFLU_RS26700 0.26 +1.3
5,965,173 + PFLU_RS26700 0.26 -1.2
5,965,173 + PFLU_RS26700 0.26 -0.0
5,965,174 - PFLU_RS26700 0.27 -2.6
5,965,174 - PFLU_RS26700 0.27 -0.0

Or see this region's nucleotide sequence