Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS25515

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
5,694,176	+		PFLU_RS25510	0.47	-0.0
5,694,177	-		PFLU_RS25510	0.47	-0.8
5,694,177	-		PFLU_RS25510	0.47	+0.4
5,694,244	+		PFLU_RS25510	0.52	+0.7
5,694,244	+		PFLU_RS25510	0.52	-0.0
5,694,245	-		PFLU_RS25510	0.52	+3.0
5,694,245	-		PFLU_RS25510	0.52	+1.0
5,694,295	+		PFLU_RS25510	0.55	-0.6
5,694,343	+		PFLU_RS25510	0.59	+0.0
5,694,343	+		PFLU_RS25510	0.59	+1.6
5,694,343	+		PFLU_RS25510	0.59	-0.6
5,694,344	-		PFLU_RS25510	0.59	-1.0
5,694,344	-		PFLU_RS25510	0.59	+0.7
5,694,442	+		PFLU_RS25510	0.66	-0.3
5,694,442	+		PFLU_RS25510	0.66	-3.2
5,694,443	-		PFLU_RS25510	0.66	+1.0
5,694,443	-		PFLU_RS25510	0.66	+0.1
5,694,598	+		PFLU_RS25510	0.77	-1.2
5,694,598	+		PFLU_RS25510	0.77	+3.0
5,694,598	+		PFLU_RS25510	0.77	-2.6
5,694,598	+		PFLU_RS25510	0.77	+1.5
5,694,598	+		PFLU_RS25510	0.77	+1.7
5,694,598	+		PFLU_RS25510	0.77	-2.3
5,694,598	+		PFLU_RS25510	0.77	-1.1
5,694,599	-		PFLU_RS25510	0.77	-0.6
5,694,599	-		PFLU_RS25510	0.77	-1.2
5,694,599	-		PFLU_RS25510	0.77	+0.5
5,694,763	+		PFLU_RS25510	0.89	+1.0
5,694,763	+		PFLU_RS25510	0.89	+0.4
5,694,763	+		PFLU_RS25510	0.89	+0.5
5,694,763	+		PFLU_RS25510	0.89	-2.7
5,694,763	+		PFLU_RS25510	0.89	-1.8
5,694,764	-		PFLU_RS25510	0.89	-2.6
5,694,764	-		PFLU_RS25510	0.89	-2.2
5,694,764	-		PFLU_RS25510	0.89	+1.0
5,694,764	-		PFLU_RS25510	0.89	+0.7
5,694,764	-		PFLU_RS25510	0.89	-2.6
5,694,764	-		PFLU_RS25510	0.89	+0.4
5,694,764	-		PFLU_RS25510	0.89	+1.1
5,694,835	+				+0.1
5,694,835	+				-1.0
5,694,835	+				+2.0
5,694,835	+				-2.0
5,694,835	+				-1.7
5,694,836	-				+1.0
5,694,836	-				-0.6
5,694,836	-				+0.1
5,694,861	+				+1.5
5,694,861	+				+2.5
5,694,861	+				+2.6
5,694,861	+				+1.0
5,694,862	-				+0.1
5,694,862	-				+2.7
5,694,862	-				-0.7
5,694,862	-				+0.4
5,694,865	+				-0.4
5,694,865	+				-1.2
5,694,865	+				+1.8
5,694,865	+				-1.3
5,694,865	+				-1.1
5,694,865	+				+2.2
5,694,865	+				+0.8
5,694,866	-				+1.0
5,694,866	-				+0.2
5,694,866	-				-2.0
5,694,866	-				-1.9
5,694,866	-				+0.2
5,694,866	-				+2.8
5,694,866	-				-0.8
5,694,866	-				-1.6
5,694,866	-				-0.1
5,694,866	-				-1.2
5,694,874	+				+0.4
5,694,897	+				+1.1
5,695,077	+				-2.3
5,695,077	+				-0.3
5,695,077	+				-2.2
5,695,078	-				+2.0
5,695,078	-				+1.5
5,695,086	+				-2.5
5,695,086	+				-3.0
5,695,086	+				-2.3
5,695,086	+				-1.2
5,695,086	+				-1.2
5,695,086	+				-0.9
5,695,087	-				+1.4
5,695,087	-				+0.4
5,695,087	-				-0.4
5,695,106	+				-1.3
5,695,126	+				-1.7
5,695,127	-				+0.9
5,695,127	-				+2.5
5,695,127	-				-2.6
5,695,252	+		PFLU_RS25515	0.22	+2.6
5,695,252	+		PFLU_RS25515	0.22	-2.3
5,695,252	+		PFLU_RS25515	0.22	+1.0
5,695,252	+		PFLU_RS25515	0.22	-1.6
5,695,252	+		PFLU_RS25515	0.22	-1.7
5,695,252	+		PFLU_RS25515	0.22	-1.5
5,695,253	-		PFLU_RS25515	0.22	-0.0
5,695,253	-		PFLU_RS25515	0.22	+1.5
5,695,405	+		PFLU_RS25515	0.40	-1.0
5,695,405	+		PFLU_RS25515	0.40	+2.0
5,695,405	+		PFLU_RS25515	0.40	+1.5
5,695,405	+		PFLU_RS25515	0.40	-1.7
5,695,406	-		PFLU_RS25515	0.40	+2.0
5,695,406	-		PFLU_RS25515	0.40	+2.0
5,695,406	-		PFLU_RS25515	0.40	+2.4
5,695,502	+		PFLU_RS25515	0.51	+0.7
5,695,502	+		PFLU_RS25515	0.51	+1.4
5,695,573	+		PFLU_RS25515	0.60	+0.3
5,695,573	+		PFLU_RS25515	0.60	-1.5
5,695,574	-		PFLU_RS25515	0.60	+1.1
5,695,574	-		PFLU_RS25515	0.60	+0.6
5,695,574	-		PFLU_RS25515	0.60	+1.7
5,695,574	-		PFLU_RS25515	0.60	+1.1
5,695,574	-		PFLU_RS25515	0.60	-1.3
5,695,683	+		PFLU_RS25515	0.72	+2.0
5,695,683	+		PFLU_RS25515	0.72	+2.0
5,695,683	+		PFLU_RS25515	0.72	+2.0
5,695,683	+		PFLU_RS25515	0.72	+0.6
5,695,684	-		PFLU_RS25515	0.72	-1.6
5,695,684	-		PFLU_RS25515	0.72	-1.5
5,695,684	-		PFLU_RS25515	0.72	-2.0
5,695,684	-		PFLU_RS25515	0.72	-1.7
5,695,826	-		PFLU_RS25515	0.89	+2.2
5,695,826	-		PFLU_RS25515	0.89	-1.3
5,695,834	+				-2.3
5,695,834	+				-0.0
5,695,835	-				+0.2
5,695,891	+				-0.8
5,695,891	+				-0.3
5,695,891	+				+1.1
5,695,892	-				-1.9
5,695,892	-				+0.7
5,696,007	+		PFLU_RS25520	0.14	+1.1
5,696,007	+		PFLU_RS25520	0.14	-1.5
5,696,007	+		PFLU_RS25520	0.14	+1.2
5,696,008	-		PFLU_RS25520	0.14	-0.3
5,696,008	-		PFLU_RS25520	0.14	+1.7
5,696,021	+		PFLU_RS25520	0.16	+0.1
5,696,122	+		PFLU_RS25520	0.32	-0.3
5,696,122	+		PFLU_RS25520	0.32	-1.7
5,696,123	-		PFLU_RS25520	0.32	-0.4
5,696,123	-		PFLU_RS25520	0.32	+0.6
5,696,226	+		PFLU_RS25520	0.48	+1.4
5,696,226	+		PFLU_RS25520	0.48	-1.7
5,696,226	+		PFLU_RS25520	0.48	+1.5
5,696,226	+		PFLU_RS25520	0.48	-1.7
5,696,226	+		PFLU_RS25520	0.48	+1.0
5,696,226	+		PFLU_RS25520	0.48	-1.8
5,696,227	-		PFLU_RS25520	0.48	-2.0
5,696,227	-		PFLU_RS25520	0.48	+0.6
5,696,227	-		PFLU_RS25520	0.48	-2.7
5,696,227	-		PFLU_RS25520	0.48	+1.1
5,696,227	-		PFLU_RS25520	0.48	+0.3
5,696,227	-		PFLU_RS25520	0.48	-1.7
5,696,337	+		PFLU_RS25520	0.65	-0.0
5,696,337	+		PFLU_RS25520	0.65	+1.2
5,696,337	+		PFLU_RS25520	0.65	-1.8
5,696,337	+		PFLU_RS25520	0.65	+1.1
5,696,337	+		PFLU_RS25520	0.65	-0.6
5,696,337	+		PFLU_RS25520	0.65	-0.8
5,696,337	+		PFLU_RS25520	0.65	-0.4
5,696,337	+		PFLU_RS25520	0.65	+1.2
5,696,337	+		PFLU_RS25520	0.65	-2.8
5,696,337	+		PFLU_RS25520	0.65	+2.2
5,696,337	+		PFLU_RS25520	0.65	-0.4
5,696,337	+		PFLU_RS25520	0.65	+0.6
5,696,337	+		PFLU_RS25520	0.65	+1.5
5,696,337	+		PFLU_RS25520	0.65	+1.1
5,696,337	+		PFLU_RS25520	0.65	-1.7
5,696,337	+		PFLU_RS25520	0.65	+1.8
5,696,337	+		PFLU_RS25520	0.65	-2.6
5,696,337	+		PFLU_RS25520	0.65	-2.2
5,696,337	+		PFLU_RS25520	0.65	+1.1
5,696,337	+		PFLU_RS25520	0.65	+2.2
5,696,337	+		PFLU_RS25520	0.65	+0.4
5,696,338	-		PFLU_RS25520	0.65	-0.4
5,696,338	-		PFLU_RS25520	0.65	-2.1
5,696,338	-		PFLU_RS25520	0.65	-1.5
5,696,338	-		PFLU_RS25520	0.65	-0.2
5,696,338	-		PFLU_RS25520	0.65	+1.6
5,696,338	-		PFLU_RS25520	0.65	-0.8
5,696,338	-		PFLU_RS25520	0.65	-1.6
5,696,338	-		PFLU_RS25520	0.65	+1.5
5,696,338	-		PFLU_RS25520	0.65	-2.4
5,696,338	-		PFLU_RS25520	0.65	-0.0
5,696,338	-		PFLU_RS25520	0.65	-1.7
5,696,338	-		PFLU_RS25520	0.65	+2.3
5,696,338	-		PFLU_RS25520	0.65	+0.4
5,696,338	-		PFLU_RS25520	0.65	+0.4
5,696,338	-		PFLU_RS25520	0.65	+1.6
5,696,338	-		PFLU_RS25520	0.65	-0.7
5,696,338	-		PFLU_RS25520	0.65	-0.0
5,696,338	-		PFLU_RS25520	0.65	-0.4
5,696,338	-		PFLU_RS25520	0.65	+0.7
5,696,382	+		PFLU_RS25520	0.72	-3.0
5,696,382	+		PFLU_RS25520	0.72	-1.7
5,696,383	-		PFLU_RS25520	0.72	+0.4
5,696,600	+				+1.3
5,696,600	+				+0.8
5,696,600	+				-2.7
5,696,601	-				+1.1
5,696,662	+				-0.4
5,696,662	+				+1.2
5,696,662	+				-1.5
5,696,662	+				+0.7
5,696,663	-				+2.1
5,696,663	-				-1.0
5,696,663	-				-1.6
5,696,663	-				+0.2
5,696,675	+				+0.4
5,696,694	+				-0.0
5,696,694	+				-2.9
5,696,694	+				-1.8
5,696,695	-				-1.5
5,696,695	-				+1.4
5,696,695	-				+1.5
5,696,695	-				+1.0
5,696,695	-				-1.2
5,696,695	-				+2.1
5,696,695	-				-1.2
5,696,696	+				+0.8
5,696,696	+				-0.6
5,696,696	+				+0.2
5,696,696	+				+0.3
5,696,696	+				+1.8
5,696,696	+				-1.2
5,696,696	+				-0.8
5,696,696	+				+1.4
5,696,696	+				-1.6
5,696,697	-				-1.6
5,696,697	-				+2.0
5,696,697	-				+0.6
5,696,697	-				+1.9
5,696,697	-				+0.1
5,696,697	-				+1.2
5,696,703	+				-0.8
5,696,704	-				-2.6
5,696,707	+				+0.7
5,696,707	+				-1.7
5,696,771	-				-2.6
5,696,771	-				-0.8
5,696,826	+				+1.0
5,696,827	-				-1.2
5,696,915	+		PFLU_RS25525	0.31	-0.9