Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS19965

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
4,516,975	+		PFLU_RS19960	0.36	-0.8
4,516,975	+		PFLU_RS19960	0.36	+1.4
4,516,975	+		PFLU_RS19960	0.36	+0.1
4,516,975	+		PFLU_RS19960	0.36	-1.4
4,516,975	+		PFLU_RS19960	0.36	-0.0
4,516,975	+		PFLU_RS19960	0.36	+1.1
4,516,975	+		PFLU_RS19960	0.36	+1.6
4,516,976	-		PFLU_RS19960	0.36	-0.8
4,516,976	-		PFLU_RS19960	0.36	-2.3
4,516,976	-		PFLU_RS19960	0.36	+1.5
4,516,976	-		PFLU_RS19960	0.36	+3.4
4,516,976	-		PFLU_RS19960	0.36	-0.8
4,516,976	-		PFLU_RS19960	0.36	+1.1
4,517,090	+		PFLU_RS19960	0.47	+0.6
4,517,090	+		PFLU_RS19960	0.47	+0.0
4,517,117	+		PFLU_RS19960	0.50	-2.7
4,517,117	+		PFLU_RS19960	0.50	+1.6
4,517,117	+		PFLU_RS19960	0.50	-0.8
4,517,118	-		PFLU_RS19960	0.50	-2.1
4,517,159	+		PFLU_RS19960	0.54	+0.2
4,517,159	+		PFLU_RS19960	0.54	+1.6
4,517,159	+		PFLU_RS19960	0.54	-0.8
4,517,159	+		PFLU_RS19960	0.54	-0.0
4,517,159	+		PFLU_RS19960	0.54	+0.2
4,517,160	-		PFLU_RS19960	0.54	+1.6
4,517,160	-		PFLU_RS19960	0.54	+2.4
4,517,306	+		PFLU_RS19960	0.68	+0.3
4,517,306	+		PFLU_RS19960	0.68	+1.6
4,517,306	+		PFLU_RS19960	0.68	+0.2
4,517,306	+		PFLU_RS19960	0.68	-0.9
4,517,307	-		PFLU_RS19960	0.68	+0.2
4,517,307	-		PFLU_RS19960	0.68	+1.3
4,517,330	+		PFLU_RS19960	0.70	+1.7
4,517,368	-		PFLU_RS19960	0.74	-0.2
4,517,370	+		PFLU_RS19960	0.74	-3.0
4,517,370	+		PFLU_RS19960	0.74	-1.3
4,517,371	-		PFLU_RS19960	0.74	+2.4
4,517,371	-		PFLU_RS19960	0.74	+1.2
4,517,371	-		PFLU_RS19960	0.74	+0.2
4,517,371	-		PFLU_RS19960	0.74	+0.1
4,517,465	+		PFLU_RS19960	0.83	+1.6
4,517,465	+		PFLU_RS19960	0.83	+0.4
4,517,465	+		PFLU_RS19960	0.83	-0.3
4,517,466	-		PFLU_RS19960	0.83	+2.6
4,517,466	-		PFLU_RS19960	0.83	-1.6
4,517,466	-		PFLU_RS19960	0.83	-0.8
4,517,466	-		PFLU_RS19960	0.83	-2.4
4,517,466	-		PFLU_RS19960	0.83	+0.3
4,517,466	-		PFLU_RS19960	0.83	-1.0
4,517,537	+				+1.4
4,517,538	-				-0.4
4,517,538	-				+1.8
4,517,626	-				+1.7
4,517,626	-				-1.4
4,517,710	-				-0.9
4,517,715	+				-1.6
4,517,754	-				+0.6
4,518,321	+		PFLU_RS19965	0.22	-1.3
4,518,322	-		PFLU_RS19965	0.22	+1.8
4,518,358	+		PFLU_RS19965	0.23	+0.2
4,518,358	+		PFLU_RS19965	0.23	+0.6
4,518,359	-		PFLU_RS19965	0.23	-0.0
4,518,359	-		PFLU_RS19965	0.23	+0.8
4,518,359	-		PFLU_RS19965	0.23	+0.4
4,518,373	+		PFLU_RS19965	0.24	-0.8
4,518,373	+		PFLU_RS19965	0.24	+0.2
4,518,373	+		PFLU_RS19965	0.24	+0.1
4,518,374	-		PFLU_RS19965	0.24	+1.6
4,518,374	-		PFLU_RS19965	0.24	-1.4
4,518,376	+		PFLU_RS19965	0.24	-0.4
4,518,376	+		PFLU_RS19965	0.24	+0.8
4,518,377	-		PFLU_RS19965	0.24	+1.7
4,518,453	+		PFLU_RS19965	0.28	-0.0
4,518,454	-		PFLU_RS19965	0.28	-2.6
4,518,454	-		PFLU_RS19965	0.28	-0.8
4,518,454	-		PFLU_RS19965	0.28	-2.1
4,518,469	+		PFLU_RS19965	0.28	+2.2
4,518,470	-		PFLU_RS19965	0.28	-1.8
4,518,470	-		PFLU_RS19965	0.28	-1.3
4,518,470	-		PFLU_RS19965	0.28	+1.4
4,518,517	+		PFLU_RS19965	0.31	+1.3
4,518,592	+		PFLU_RS19965	0.34	+1.1
4,518,592	+		PFLU_RS19965	0.34	-0.0
4,518,592	+		PFLU_RS19965	0.34	+2.0
4,518,592	+		PFLU_RS19965	0.34	+0.9
4,518,593	-		PFLU_RS19965	0.34	-1.4
4,518,593	-		PFLU_RS19965	0.34	+0.4
4,518,593	-		PFLU_RS19965	0.34	-1.3
4,518,593	-		PFLU_RS19965	0.34	-2.1
4,518,778	+		PFLU_RS19965	0.42	-1.6
4,518,778	+		PFLU_RS19965	0.42	+3.6
4,518,779	-		PFLU_RS19965	0.42	+1.3
4,518,779	-		PFLU_RS19965	0.42	-1.6
4,518,826	+		PFLU_RS19965	0.45	+0.4
4,518,955	+		PFLU_RS19965	0.50	+0.4
4,518,955	+		PFLU_RS19965	0.50	-1.6
4,518,973	+		PFLU_RS19965	0.51	+1.7
4,518,973	+		PFLU_RS19965	0.51	-2.1
4,518,973	+		PFLU_RS19965	0.51	+1.6
4,518,973	+		PFLU_RS19965	0.51	+3.1
4,518,973	+		PFLU_RS19965	0.51	-0.4
4,518,974	-		PFLU_RS19965	0.51	+1.2
4,518,974	-		PFLU_RS19965	0.51	+1.1
4,518,974	-		PFLU_RS19965	0.51	-1.6
4,519,000	+		PFLU_RS19965	0.53	+2.7
4,519,001	-		PFLU_RS19965	0.53	-0.4
4,519,051	+		PFLU_RS19965	0.55	+1.8
4,519,051	+		PFLU_RS19965	0.55	+1.1
4,519,072	+		PFLU_RS19965	0.56	+1.8
4,519,073	-		PFLU_RS19965	0.56	+2.4
4,519,073	-		PFLU_RS19965	0.56	-2.4
4,519,159	+		PFLU_RS19965	0.60	-1.6
4,519,159	+		PFLU_RS19965	0.60	+2.6
4,519,160	-		PFLU_RS19965	0.60	+0.8
4,519,160	-		PFLU_RS19965	0.60	+2.6
4,519,160	-		PFLU_RS19965	0.60	-1.3
4,519,160	-		PFLU_RS19965	0.60	+2.9
4,519,160	-		PFLU_RS19965	0.60	+2.4
4,519,274	-		PFLU_RS19965	0.65	+2.1
4,519,300	+		PFLU_RS19965	0.66	-0.4
4,519,300	+		PFLU_RS19965	0.66	+1.4
4,519,300	+		PFLU_RS19965	0.66	+2.1
4,519,301	-		PFLU_RS19965	0.66	-0.0
4,519,301	-		PFLU_RS19965	0.66	-2.6
4,519,301	-		PFLU_RS19965	0.66	+0.6
4,519,301	-		PFLU_RS19965	0.66	-0.0
4,519,309	+		PFLU_RS19965	0.67	-0.0
4,519,322	-		PFLU_RS19965	0.67	-1.8
4,519,336	+		PFLU_RS19965	0.68	+0.8
4,519,336	+		PFLU_RS19965	0.68	+0.6
4,519,336	+		PFLU_RS19965	0.68	-0.1
4,519,336	+		PFLU_RS19965	0.68	+1.6
4,519,337	-		PFLU_RS19965	0.68	+4.1
4,519,337	-		PFLU_RS19965	0.68	+0.7
4,519,399	-		PFLU_RS19965	0.71	-1.6
4,519,475	-		PFLU_RS19965	0.74	+0.9
4,519,483	+		PFLU_RS19965	0.75	-0.8
4,519,483	+		PFLU_RS19965	0.75	+2.7
4,519,483	+		PFLU_RS19965	0.75	-0.0
4,519,483	+		PFLU_RS19965	0.75	-0.0
4,519,483	+		PFLU_RS19965	0.75	-1.4
4,519,483	+		PFLU_RS19965	0.75	-1.0
4,519,484	-		PFLU_RS19965	0.75	+2.1
4,519,624	+		PFLU_RS19965	0.81	-0.4
4,519,624	+		PFLU_RS19965	0.81	-0.0
4,519,685	+		PFLU_RS19965	0.84	+0.8
4,519,685	+		PFLU_RS19965	0.84	-2.0
4,519,685	+		PFLU_RS19965	0.84	+0.9
4,519,686	-		PFLU_RS19965	0.84	-1.9
4,519,686	-		PFLU_RS19965	0.84	+0.2
4,519,686	-		PFLU_RS19965	0.84	-1.4
4,519,686	-		PFLU_RS19965	0.84	+0.7
4,519,686	-		PFLU_RS19965	0.84	+1.3
4,519,686	-		PFLU_RS19965	0.84	+2.1
4,519,686	-		PFLU_RS19965	0.84	-2.4
4,519,686	-		PFLU_RS19965	0.84	+1.0
4,519,686	-		PFLU_RS19965	0.84	-1.9
4,519,686	-		PFLU_RS19965	0.84	+2.4
4,519,686	-		PFLU_RS19965	0.84	+0.7
4,519,726	+		PFLU_RS19965	0.86	-0.4
4,519,726	+		PFLU_RS19965	0.86	+1.7
4,519,726	+		PFLU_RS19965	0.86	+0.2
4,519,726	+		PFLU_RS19965	0.86	+1.3
4,519,727	-		PFLU_RS19965	0.86	+0.6
4,519,741	+		PFLU_RS19965	0.86	+1.8
4,519,742	-		PFLU_RS19965	0.86	+1.6
4,519,790	-		PFLU_RS19965	0.89	+2.1
4,519,790	-		PFLU_RS19965	0.89	-1.3
4,519,814	-		PFLU_RS19965	0.90	-0.0
4,519,852	+				+0.6
4,519,852	+				-1.6
4,519,853	-				+1.1
4,519,853	-				-1.0
4,519,889	-				+1.1
4,519,889	-				-3.2
4,519,943	-				-0.8
4,519,972	+				-0.1
4,519,972	+				-0.0
4,519,972	+				-2.3
4,519,972	+				+2.6
4,519,972	+				+1.0
4,519,972	+				+0.1
4,519,972	+				-0.4
4,519,972	+				+0.6
4,519,972	+				-1.2
4,519,972	+				+1.6
4,519,972	+				-3.3
4,519,972	+				-3.0
4,519,973	-				+2.1
4,519,973	-				-2.0
4,519,973	-				+0.8
4,519,973	-				+1.8
4,519,973	-				+0.6
4,519,973	-				-2.1
4,519,973	-				-2.2
4,519,973	-				+0.8
4,519,973	-				+1.6
4,519,973	-				+0.9
4,519,973	-				-1.0
4,519,973	-				-0.8
4,519,973	-				+0.2
4,519,973	-				+0.5
4,519,973	-				-2.6
4,519,973	-				+1.6
4,519,974	+				+1.8
4,519,974	+				-1.9
4,519,974	+				-0.8
4,519,974	+				+1.8
4,519,975	-				+0.6
4,519,975	-				-0.6
4,519,975	-				+0.9
4,519,975	-				-1.6
4,519,975	-				+0.4
4,520,008	+				-0.8
4,520,008	+				-2.2
4,520,008	+				-0.8
4,520,038	+				+1.6
4,520,038	+				-3.4
4,520,039	-				+1.2
4,520,039	-				-0.4
4,520,039	-				-2.4
4,520,039	-				+0.8
4,520,151	+				-0.0
4,520,151	+				+0.0
4,520,152	-				-0.8
4,520,282	-		PFLU_RS19970	0.18	-1.0
4,520,343	+		PFLU_RS19970	0.23	-0.7
4,520,343	+		PFLU_RS19970	0.23	-2.1
4,520,344	-		PFLU_RS19970	0.23	-0.4
4,520,344	-		PFLU_RS19970	0.23	+1.2
4,520,344	-		PFLU_RS19970	0.23	+0.2
4,520,344	-		PFLU_RS19970	0.23	+0.7
4,520,344	-		PFLU_RS19970	0.23	+0.8
4,520,344	-		PFLU_RS19970	0.23	-0.6
4,520,344	-		PFLU_RS19970	0.23	-1.6
4,520,344	-		PFLU_RS19970	0.23	-2.0
4,520,344	-		PFLU_RS19970	0.23	+1.3
4,520,583	+		PFLU_RS19970	0.41	+2.2
4,520,583	+		PFLU_RS19970	0.41	-0.8
4,520,583	+		PFLU_RS19970	0.41	+1.3
4,520,583	+		PFLU_RS19970	0.41	+0.6
4,520,584	-		PFLU_RS19970	0.41	-0.3
4,520,584	-		PFLU_RS19970	0.41	+1.5
4,520,584	-		PFLU_RS19970	0.41	-2.1
4,520,586	+		PFLU_RS19970	0.41	-2.5
4,520,587	-		PFLU_RS19970	0.41	+0.2
4,520,587	-		PFLU_RS19970	0.41	-1.0
4,520,587	-		PFLU_RS19970	0.41	+0.8
4,520,751	-		PFLU_RS19970	0.53	-0.4
4,520,787	+		PFLU_RS19970	0.56	-1.8
4,520,788	-		PFLU_RS19970	0.56	+1.9