Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17815

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
4,045,137	+		PFLU_RS17810	0.44	+0.2
4,045,137	+		PFLU_RS17810	0.44	-0.1
4,045,137	+		PFLU_RS17810	0.44	+0.7
4,045,138	-		PFLU_RS17810	0.44	+1.4
4,045,138	-		PFLU_RS17810	0.44	+1.6
4,045,138	-		PFLU_RS17810	0.44	+0.7
4,045,143	-		PFLU_RS17810	0.44	+2.0
4,045,143	-		PFLU_RS17810	0.44	+1.3
4,045,184	-		PFLU_RS17810	0.47	-0.8
4,045,260	+		PFLU_RS17810	0.52	+2.1
4,045,260	+		PFLU_RS17810	0.52	+0.5
4,045,260	+		PFLU_RS17810	0.52	+1.8
4,045,260	+		PFLU_RS17810	0.52	+1.1
4,045,261	-		PFLU_RS17810	0.53	+0.9
4,045,276	+		PFLU_RS17810	0.54	-1.9
4,045,276	+		PFLU_RS17810	0.54	+1.4
4,045,276	+		PFLU_RS17810	0.54	+0.0
4,045,276	+		PFLU_RS17810	0.54	-2.0
4,045,277	-		PFLU_RS17810	0.54	-0.1
4,045,347	+		PFLU_RS17810	0.59	+0.6
4,045,347	+		PFLU_RS17810	0.59	+0.9
4,045,347	+		PFLU_RS17810	0.59	-2.6
4,045,347	+		PFLU_RS17810	0.59	-1.4
4,045,347	+		PFLU_RS17810	0.59	+1.4
4,045,348	-		PFLU_RS17810	0.59	-1.9
4,045,348	-		PFLU_RS17810	0.59	+0.9
4,045,359	-		PFLU_RS17810	0.59	-0.1
4,045,377	+		PFLU_RS17810	0.61	-1.4
4,045,378	-		PFLU_RS17810	0.61	-2.5
4,045,443	+		PFLU_RS17810	0.65	+0.4
4,045,443	+		PFLU_RS17810	0.65	-2.4
4,045,443	+		PFLU_RS17810	0.65	+0.8
4,045,444	-		PFLU_RS17810	0.65	-1.0
4,045,444	-		PFLU_RS17810	0.65	+1.4
4,045,444	-		PFLU_RS17810	0.65	-1.9
4,045,532	+		PFLU_RS17810	0.72	-0.1
4,045,532	+		PFLU_RS17810	0.72	-0.4
4,045,533	-		PFLU_RS17810	0.72	-0.3
4,045,533	-		PFLU_RS17810	0.72	-2.6
4,045,533	-		PFLU_RS17810	0.72	+0.9
4,045,533	-		PFLU_RS17810	0.72	-1.7
4,045,533	-		PFLU_RS17810	0.72	+0.1
4,045,533	-		PFLU_RS17810	0.72	+1.4
4,045,608	+		PFLU_RS17810	0.77	+1.8
4,045,608	+		PFLU_RS17810	0.77	-0.9
4,045,677	-		PFLU_RS17810	0.82	+0.2
4,045,677	-		PFLU_RS17810	0.82	-3.0
4,045,677	-		PFLU_RS17810	0.82	+1.7
4,045,707	+		PFLU_RS17810	0.84	-1.4
4,045,821	+				-1.9
4,045,853	+				+1.4
4,045,853	+				+1.6
4,045,853	+				+0.8
4,045,891	+				+2.5
4,045,891	+				-2.5
4,045,892	-				+1.7
4,045,892	-				-2.5
4,045,940	+				-1.6
4,045,997	+				-2.5
4,045,997	+				-2.6
4,045,997	+				-1.6
4,045,997	+				+2.1
4,045,997	+				-0.6
4,045,997	+				-0.1
4,045,997	+				+1.2
4,045,997	+				-1.9
4,045,997	+				+1.0
4,045,997	+				+0.3
4,045,997	+				-2.0
4,045,997	+				-1.7
4,045,998	-				-1.7
4,045,998	-				-0.9
4,045,998	-				+2.8
4,045,998	-				-0.1
4,045,998	-				-2.4
4,045,998	-				-0.6
4,045,998	-				-1.1
4,045,998	-				+0.1
4,045,998	-				+1.2
4,045,998	-				+1.0
4,045,998	-				+2.0
4,045,998	-				+0.7
4,046,008	+				+1.1
4,046,008	+				+5.7
4,046,009	-				+1.3
4,046,009	-				+1.2
4,046,016	+				+0.0
4,046,026	+				-2.5
4,046,026	+				-2.3
4,046,026	+				-3.1
4,046,027	-				-1.6
4,046,027	-				+1.4
4,046,027	-				-2.9
4,046,027	-				-2.7
4,046,062	-				-1.7
4,046,080	+				+0.4
4,046,080	+				+1.0
4,046,080	+				-1.4
4,046,081	-				+2.2
4,046,081	-				-1.9
4,046,081	-				-0.6
4,046,085	-				+1.1
4,046,085	-				-2.6
4,046,166	+				-2.3
4,046,166	+				-1.7
4,046,166	+				-2.1
4,046,167	-				-1.6
4,046,167	-				-2.0
4,046,167	-				+0.4
4,046,167	-				-0.9
4,046,167	-				+2.0
4,046,167	-				-1.9
4,046,246	-		PFLU_RS17815	0.20	-2.6
4,046,246	-		PFLU_RS17815	0.20	+1.6
4,046,406	+		PFLU_RS17815	0.41	-2.3
4,046,441	-		PFLU_RS17815	0.46	+2.8
4,046,462	-		PFLU_RS17815	0.49	+0.4
4,046,771	+				-1.6
4,046,772	-				+1.1
4,046,772	-				+0.9
4,046,772	-				-2.1
4,046,772	-				-0.9
4,046,796	+				+0.7
4,046,796	+				+1.4
4,046,796	+				-0.6
4,046,796	+				+0.8
4,046,796	+				-2.0
4,046,796	+				+0.6
4,046,796	+				+0.9
4,046,796	+				-1.1
4,046,796	+				-2.6
4,046,796	+				+1.2
4,046,796	+				+0.7
4,046,796	+				+1.4
4,046,796	+				+1.3
4,046,796	+				+2.4
4,046,796	+				+1.3
4,046,796	+				-2.3
4,046,797	-				+0.9
4,046,797	-				+0.2
4,046,797	-				-0.3
4,046,797	-				-1.9
4,046,797	-				-1.6
4,046,797	-				+1.7
4,046,797	-				-1.1
4,046,797	-				+0.7
4,046,797	-				-1.4
4,046,797	-				+2.0
4,046,852	-				-1.2
4,046,957	+				+2.4
4,046,957	+				+0.6
4,046,958	-				+0.4
4,046,958	-				+1.4
4,046,958	-				-0.3
4,046,966	+				+1.2
4,046,966	+				+3.8
4,046,966	+				-0.9
4,046,966	+				+0.8
4,046,966	+				-0.8
4,046,966	+				-1.6
4,046,966	+				-2.0
4,046,966	+				+1.6
4,046,966	+				-1.1
4,046,967	-				+0.9
4,046,967	-				-1.4
4,046,967	-				-2.4
4,046,967	-				-0.9
4,046,967	-				+1.1
4,046,967	-				-1.6
4,046,968	+				-2.0
4,046,968	+				+0.8
4,046,968	+				-2.6
4,046,968	+				-3.1
4,046,969	-				-1.3
4,046,969	-				-2.5
4,046,969	-				-0.6
4,046,969	-				-0.9
4,046,986	+		PFLU_RS17820	0.10	+2.0
4,046,986	+		PFLU_RS17820	0.10	+1.4
4,046,986	+		PFLU_RS17820	0.10	-0.9
4,046,986	+		PFLU_RS17820	0.10	-1.2
4,046,987	-		PFLU_RS17820	0.10	+0.3
4,046,987	-		PFLU_RS17820	0.10	+1.6
4,046,987	-		PFLU_RS17820	0.10	+1.1
4,046,987	-		PFLU_RS17820	0.10	+0.8
4,047,092	+		PFLU_RS17820	0.18	-0.1
4,047,093	-		PFLU_RS17820	0.18	+0.4
4,047,098	+		PFLU_RS17820	0.19	-0.9
4,047,146	-		PFLU_RS17820	0.23	+1.2
4,047,146	-		PFLU_RS17820	0.23	+0.6
4,047,191	+		PFLU_RS17820	0.26	+2.1
4,047,192	-		PFLU_RS17820	0.26	+1.8
4,047,192	-		PFLU_RS17820	0.26	+0.6
4,047,192	-		PFLU_RS17820	0.26	-1.7
4,047,192	-		PFLU_RS17820	0.26	-2.0
4,047,192	-		PFLU_RS17820	0.26	+3.1
4,047,689	+		PFLU_RS17820	0.64	-1.9
4,047,689	+		PFLU_RS17820	0.64	+0.5
4,047,689	+		PFLU_RS17820	0.64	-2.6
4,047,689	+		PFLU_RS17820	0.64	+1.8
4,047,819	+		PFLU_RS17820	0.74	-2.5
4,047,819	+		PFLU_RS17820	0.74	+1.3
4,047,819	+		PFLU_RS17820	0.74	-2.4