Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16985

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
3,850,861	+		PFLU_RS16980	0.23	-2.9
3,850,861	+		PFLU_RS16980	0.23	-1.8
3,850,861	+		PFLU_RS16980	0.23	-3.2
3,850,861	+		PFLU_RS16980	0.23	-1.9
3,850,862	-		PFLU_RS16980	0.23	-1.6
3,850,862	-		PFLU_RS16980	0.23	-1.6
3,850,862	-		PFLU_RS16980	0.23	-0.5
3,850,862	-		PFLU_RS16980	0.23	-0.6
3,850,904	+		PFLU_RS16980	0.27	-3.5
3,850,904	+		PFLU_RS16980	0.27	+2.7
3,850,904	+		PFLU_RS16980	0.27	+1.4
3,850,904	+		PFLU_RS16980	0.27	-0.2
3,850,904	+		PFLU_RS16980	0.27	-1.2
3,850,904	+		PFLU_RS16980	0.27	+1.3
3,850,904	+		PFLU_RS16980	0.27	+0.4
3,850,904	+		PFLU_RS16980	0.27	+0.4
3,850,904	+		PFLU_RS16980	0.27	+1.3
3,850,904	+		PFLU_RS16980	0.27	+0.9
3,850,905	-		PFLU_RS16980	0.27	-1.2
3,850,905	-		PFLU_RS16980	0.27	-1.4
3,850,905	-		PFLU_RS16980	0.27	-1.9
3,850,905	-		PFLU_RS16980	0.27	+1.2
3,850,905	-		PFLU_RS16980	0.27	-0.2
3,851,339	-		PFLU_RS16980	0.66	-0.8
3,851,467	+		PFLU_RS16980	0.77	-2.7
3,851,513	+		PFLU_RS16980	0.81	+1.1
3,851,514	-		PFLU_RS16980	0.81	+1.4
3,851,522	+		PFLU_RS16980	0.82	-2.1
3,851,522	+		PFLU_RS16980	0.82	-1.4
3,851,522	+		PFLU_RS16980	0.82	-2.3
3,851,522	+		PFLU_RS16980	0.82	+1.4
3,851,522	+		PFLU_RS16980	0.82	+1.4
3,851,522	+		PFLU_RS16980	0.82	-2.9
3,851,522	+		PFLU_RS16980	0.82	-0.0
3,851,523	-		PFLU_RS16980	0.82	+1.4
3,851,769	-				-0.2
3,851,773	+				-1.2
3,851,773	+				-2.2
3,851,774	-				-0.9
3,851,774	-				+1.1
3,851,776	+				+1.2
3,851,777	-				-1.6
3,851,790	+				+0.4
3,851,790	+				+1.8
3,851,790	+				-0.6
3,851,790	+				-1.2
3,851,790	+				+0.3
3,851,790	+				+1.2
3,851,790	+				-1.4
3,851,790	+				-1.2
3,851,790	+				+0.4
3,851,791	-				-1.4
3,851,791	-				-0.8
3,851,791	-				+1.6
3,851,791	-				-0.7
3,851,794	+				-1.6
3,851,794	+				+0.2
3,851,794	+				+1.5
3,851,794	+				-2.3
3,851,794	+				-0.2
3,851,794	+				-2.7
3,851,794	+				+2.2
3,851,794	+				-2.3
3,851,794	+				+0.6
3,851,794	+				+2.4
3,851,794	+				-1.2
3,851,794	+				-0.9
3,851,794	+				-1.6
3,851,794	+				-1.8
3,851,794	+				-2.8
3,851,794	+				-2.2
3,851,795	-				-1.2
3,851,795	-				-0.2
3,851,795	-				-0.8
3,851,795	-				-1.2
3,851,795	-				+2.6
3,851,795	-				-0.5
3,851,795	-				-2.1
3,851,800	+				-1.4
3,851,800	+				-1.4
3,851,801	-				+0.9
3,851,801	-				+1.3
3,851,801	-				-3.2
3,851,886	-		PFLU_RS16985	0.13	+1.6
3,851,897	+		PFLU_RS16985	0.15	+1.8
3,851,898	-		PFLU_RS16985	0.16	+1.3
3,852,002	+		PFLU_RS16985	0.35	-0.6
3,852,002	+		PFLU_RS16985	0.35	+1.4
3,852,002	+		PFLU_RS16985	0.35	+1.4
3,852,002	+		PFLU_RS16985	0.35	-2.3
3,852,175	+		PFLU_RS16985	0.68	-0.9
3,852,175	+		PFLU_RS16985	0.68	+1.3
3,852,175	+		PFLU_RS16985	0.68	+1.6
3,852,175	+		PFLU_RS16985	0.68	+1.0
3,852,175	+		PFLU_RS16985	0.68	-0.3
3,852,175	+		PFLU_RS16985	0.68	-0.9
3,852,175	+		PFLU_RS16985	0.68	-0.2
3,852,175	+		PFLU_RS16985	0.68	-0.9
3,852,175	+		PFLU_RS16985	0.68	+1.0
3,852,175	+		PFLU_RS16985	0.68	-0.9
3,852,175	+		PFLU_RS16985	0.68	-2.4
3,852,175	+		PFLU_RS16985	0.68	+1.4
3,852,175	+		PFLU_RS16985	0.68	-1.4
3,852,175	+		PFLU_RS16985	0.68	+1.4
3,852,175	+		PFLU_RS16985	0.68	+2.1
3,852,175	+		PFLU_RS16985	0.68	+1.0
3,852,176	-		PFLU_RS16985	0.69	+1.0
3,852,176	-		PFLU_RS16985	0.69	+1.4
3,852,176	-		PFLU_RS16985	0.69	+0.1
3,852,176	-		PFLU_RS16985	0.69	-3.4
3,852,176	-		PFLU_RS16985	0.69	+0.1
3,852,176	-		PFLU_RS16985	0.69	+0.8
3,852,176	-		PFLU_RS16985	0.69	-1.6
3,852,176	-		PFLU_RS16985	0.69	+3.1
3,852,308	+				+1.4
3,852,308	+				-2.6
3,852,309	-				+2.4
3,852,309	-				+2.0
3,852,309	-				-1.6
3,852,379	-				+0.6
3,852,427	-				+1.9
3,852,497	-				+0.4
3,852,497	-				+0.7
3,852,497	-				-0.0
3,852,715	+		PFLU_RS16990	0.18	+2.6
3,852,764	-		PFLU_RS16990	0.22	+1.1
3,852,806	+		PFLU_RS16990	0.25	-1.4
3,852,806	+		PFLU_RS16990	0.25	+1.2
3,852,806	+		PFLU_RS16990	0.25	-1.4
3,852,807	-		PFLU_RS16990	0.25	-0.6
3,852,973	+		PFLU_RS16990	0.38	-0.3
3,852,973	+		PFLU_RS16990	0.38	-0.2
3,852,973	+		PFLU_RS16990	0.38	-1.2
3,852,973	+		PFLU_RS16990	0.38	-0.6
3,852,973	+		PFLU_RS16990	0.38	-1.9
3,852,973	+		PFLU_RS16990	0.38	-1.4
3,852,973	+		PFLU_RS16990	0.38	-0.2
3,852,973	+		PFLU_RS16990	0.38	+0.4
3,852,974	-		PFLU_RS16990	0.38	+1.6
3,852,974	-		PFLU_RS16990	0.38	+0.2
3,853,021	+		PFLU_RS16990	0.42	+3.2
3,853,021	+		PFLU_RS16990	0.42	-0.2
3,853,021	+		PFLU_RS16990	0.42	+1.6
3,853,021	+		PFLU_RS16990	0.42	+0.5
3,853,021	+		PFLU_RS16990	0.42	-0.6
3,853,021	+		PFLU_RS16990	0.42	+2.6
3,853,021	+		PFLU_RS16990	0.42	-1.4
3,853,021	+		PFLU_RS16990	0.42	-3.4
3,853,021	+		PFLU_RS16990	0.42	-0.6
3,853,021	+		PFLU_RS16990	0.42	+1.9
3,853,021	+		PFLU_RS16990	0.42	-2.6
3,853,021	+		PFLU_RS16990	0.42	-0.9
3,853,021	+		PFLU_RS16990	0.42	-1.4
3,853,021	+		PFLU_RS16990	0.42	+1.1
3,853,021	+		PFLU_RS16990	0.42	-2.6
3,853,021	+		PFLU_RS16990	0.42	-0.9
3,853,021	+		PFLU_RS16990	0.42	-2.9
3,853,021	+		PFLU_RS16990	0.42	-0.0
3,853,021	+		PFLU_RS16990	0.42	-1.4
3,853,021	+		PFLU_RS16990	0.42	+0.5
3,853,021	+		PFLU_RS16990	0.42	-1.4
3,853,021	+		PFLU_RS16990	0.42	+0.6
3,853,021	+		PFLU_RS16990	0.42	-1.2
3,853,021	+		PFLU_RS16990	0.42	-2.2
3,853,021	+		PFLU_RS16990	0.42	-1.6
3,853,021	+		PFLU_RS16990	0.42	+1.5
3,853,021	+		PFLU_RS16990	0.42	+1.2
3,853,021	+		PFLU_RS16990	0.42	-3.0
3,853,021	+		PFLU_RS16990	0.42	+0.6
3,853,022	-		PFLU_RS16990	0.42	+1.1
3,853,022	-		PFLU_RS16990	0.42	+1.4
3,853,022	-		PFLU_RS16990	0.42	+1.9
3,853,022	-		PFLU_RS16990	0.42	-0.6
3,853,022	-		PFLU_RS16990	0.42	-1.2
3,853,022	-		PFLU_RS16990	0.42	+1.1
3,853,022	-		PFLU_RS16990	0.42	+2.4
3,853,022	-		PFLU_RS16990	0.42	+0.6
3,853,022	-		PFLU_RS16990	0.42	-2.2
3,853,022	-		PFLU_RS16990	0.42	-2.2
3,853,022	-		PFLU_RS16990	0.42	-2.5
3,853,022	-		PFLU_RS16990	0.42	+0.4
3,853,022	-		PFLU_RS16990	0.42	-2.4
3,853,022	-		PFLU_RS16990	0.42	+1.4
3,853,022	-		PFLU_RS16990	0.42	-0.9
3,853,022	-		PFLU_RS16990	0.42	+0.8
3,853,022	-		PFLU_RS16990	0.42	+2.9
3,853,022	-		PFLU_RS16990	0.42	-0.7
3,853,022	-		PFLU_RS16990	0.42	+0.9
3,853,022	-		PFLU_RS16990	0.42	-2.2
3,853,022	-		PFLU_RS16990	0.42	-1.4
3,853,022	-		PFLU_RS16990	0.42	+1.0
3,853,022	-		PFLU_RS16990	0.42	-2.4
3,853,022	-		PFLU_RS16990	0.42	-0.9
3,853,022	-		PFLU_RS16990	0.42	-1.2
3,853,283	+		PFLU_RS16990	0.62	-1.4
3,853,283	+		PFLU_RS16990	0.62	+2.2
3,853,283	+		PFLU_RS16990	0.62	+1.9
3,853,283	+		PFLU_RS16990	0.62	-1.4
3,853,283	+		PFLU_RS16990	0.62	+0.0
3,853,283	+		PFLU_RS16990	0.62	-1.5
3,853,284	-		PFLU_RS16990	0.62	+1.4
3,853,284	-		PFLU_RS16990	0.62	-1.2
3,853,284	-		PFLU_RS16990	0.62	-0.6
3,853,284	-		PFLU_RS16990	0.62	-0.6
3,853,284	-		PFLU_RS16990	0.62	+0.9
3,853,321	+		PFLU_RS16990	0.65	-0.9
3,853,321	+		PFLU_RS16990	0.65	+1.0
3,853,321	+		PFLU_RS16990	0.65	+1.0
3,853,322	-		PFLU_RS16990	0.65	-1.6
3,853,322	-		PFLU_RS16990	0.65	+3.6
3,853,322	-		PFLU_RS16990	0.65	+1.4
3,853,322	-		PFLU_RS16990	0.65	+0.3
3,853,322	-		PFLU_RS16990	0.65	+0.9
3,853,322	-		PFLU_RS16990	0.65	+1.4
3,853,322	-		PFLU_RS16990	0.65	-0.6