Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16895

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
3,829,855	+		PFLU_RS16885	0.75	+0.6
3,829,856	-		PFLU_RS16885	0.76	+2.8
3,830,016	-				+0.1
3,830,016	-				+1.7
3,830,016	-				-0.6
3,830,281	+		PFLU_RS16890	0.38	-1.2
3,830,320	+		PFLU_RS16890	0.45	+0.2
3,830,320	+		PFLU_RS16890	0.45	+2.0
3,830,321	-		PFLU_RS16890	0.45	+0.7
3,830,321	-		PFLU_RS16890	0.45	+1.0
3,830,321	-		PFLU_RS16890	0.45	-2.3
3,830,321	-		PFLU_RS16890	0.45	+1.0
3,830,321	-		PFLU_RS16890	0.45	+1.0
3,830,336	-		PFLU_RS16890	0.48	+1.8
3,830,336	-		PFLU_RS16890	0.48	+0.6
3,830,336	-		PFLU_RS16890	0.48	-1.2
3,830,336	-		PFLU_RS16890	0.48	+0.4
3,830,494	+		PFLU_RS16890	0.76	-2.4
3,830,494	+		PFLU_RS16890	0.76	+0.4
3,830,494	+		PFLU_RS16890	0.76	+0.1
3,830,494	+		PFLU_RS16890	0.76	+1.3
3,830,495	-		PFLU_RS16890	0.77	+0.4
3,830,495	-		PFLU_RS16890	0.77	-0.2
3,830,495	-		PFLU_RS16890	0.77	-0.6
3,830,516	+		PFLU_RS16890	0.80	-2.4
3,830,516	+		PFLU_RS16890	0.80	-0.2
3,830,517	-		PFLU_RS16890	0.81	-1.2
3,830,517	-		PFLU_RS16890	0.81	-1.3
3,830,518	+		PFLU_RS16890	0.81	+0.8
3,830,519	-		PFLU_RS16890	0.81	+1.9
3,830,519	-		PFLU_RS16890	0.81	-1.4
3,830,519	-		PFLU_RS16890	0.81	-0.0
3,830,519	-		PFLU_RS16890	0.81	+1.0
3,830,560	+		PFLU_RS16890	0.88	+0.2
3,830,560	+		PFLU_RS16890	0.88	-1.2
3,830,560	+		PFLU_RS16890	0.88	-2.5
3,830,560	+		PFLU_RS16890	0.88	-0.6
3,830,561	-		PFLU_RS16890	0.88	-0.2
3,830,561	-		PFLU_RS16890	0.88	+0.2
3,830,561	-		PFLU_RS16890	0.88	-1.8
3,830,561	-		PFLU_RS16890	0.88	-0.4
3,830,561	-		PFLU_RS16890	0.88	+1.1
3,830,561	-		PFLU_RS16890	0.88	+3.0
3,830,588	-				-2.4
3,830,588	-				-1.6
3,830,655	+				-2.4
3,830,656	-				+0.4
3,830,656	-				-1.2
3,830,667	+				+1.3
3,830,667	+				-2.1
3,830,667	+				-0.1
3,830,667	+				+0.7
3,830,667	+				+0.8
3,830,667	+				-2.3
3,830,668	-				+1.7
3,830,668	-				+2.2
3,830,668	-				+0.4
3,830,678	+				-1.4
3,830,678	+				-0.1
3,830,678	+				+1.4
3,830,678	+				-1.6
3,830,678	+				-2.2
3,830,679	-				+1.4
3,830,679	-				+1.6
3,830,679	-				-1.4
3,830,679	-				-2.6
3,830,679	-				-2.2
3,830,679	-				-0.9
3,830,679	-				+1.9
3,830,679	-				+1.4
3,830,685	+				+0.7
3,830,685	+				+0.4
3,830,696	+				-0.6
3,830,696	+				-0.0
3,830,697	-				+0.4
3,830,697	-				+1.4
3,830,697	-				-2.2
3,830,721	+				+0.6
3,830,730	+				+2.7
3,830,731	-				-0.6
3,830,807	+				+0.9
3,830,807	+				-0.2
3,830,906	+		PFLU_RS16895	0.30	-1.8
3,830,906	+		PFLU_RS16895	0.30	-0.6
3,830,906	+		PFLU_RS16895	0.30	+1.3
3,830,907	-		PFLU_RS16895	0.30	+0.8
3,830,907	-		PFLU_RS16895	0.30	+1.2
3,830,931	-		PFLU_RS16895	0.35	+0.9
3,830,987	+		PFLU_RS16895	0.46	+1.2
3,830,987	+		PFLU_RS16895	0.46	-2.2
3,830,987	+		PFLU_RS16895	0.46	-1.2
3,830,988	-		PFLU_RS16895	0.46	-3.6
3,830,994	-		PFLU_RS16895	0.47	+1.4
3,831,158	+		PFLU_RS16895	0.81	+2.0
3,831,159	-		PFLU_RS16895	0.81	-1.4
3,831,262	+				+1.4
3,831,262	+				+1.3
3,831,263	-				+1.7
3,831,263	-				-0.9
3,831,263	-				-0.9
3,831,263	-				+0.4
3,831,346	+				-2.1
3,831,346	+				-0.5
3,831,347	-				-1.9
3,831,355	+				+1.6
3,831,355	+				+0.4
3,831,356	-				-2.3
3,831,460	+		PFLU_RS16900	0.18	-0.6
3,831,460	+		PFLU_RS16900	0.18	+3.0
3,831,460	+		PFLU_RS16900	0.18	+0.9
3,831,460	+		PFLU_RS16900	0.18	+0.0
3,831,460	+		PFLU_RS16900	0.18	-0.2
3,831,460	+		PFLU_RS16900	0.18	+0.4
3,831,460	+		PFLU_RS16900	0.18	-1.8
3,831,460	+		PFLU_RS16900	0.18	-0.4
3,831,460	+		PFLU_RS16900	0.18	+2.0
3,831,461	-		PFLU_RS16900	0.18	+1.7
3,831,461	-		PFLU_RS16900	0.18	+0.1
3,831,461	-		PFLU_RS16900	0.18	+2.0
3,831,461	-		PFLU_RS16900	0.18	-0.5
3,831,461	-		PFLU_RS16900	0.18	+0.8
3,831,461	-		PFLU_RS16900	0.18	-0.8
3,831,461	-		PFLU_RS16900	0.18	+0.2
3,831,511	+		PFLU_RS16900	0.24	-2.8
3,831,511	+		PFLU_RS16900	0.24	-0.1
3,831,511	+		PFLU_RS16900	0.24	+3.1
3,831,511	+		PFLU_RS16900	0.24	-1.4
3,831,511	+		PFLU_RS16900	0.24	-1.6
3,831,511	+		PFLU_RS16900	0.24	-2.4
3,831,512	-		PFLU_RS16900	0.24	-0.2
3,831,512	-		PFLU_RS16900	0.24	+2.3
3,831,512	-		PFLU_RS16900	0.24	+2.7
3,831,512	-		PFLU_RS16900	0.24	+2.2
3,831,512	-		PFLU_RS16900	0.24	-3.0
3,831,520	+		PFLU_RS16900	0.25	+0.7
3,831,520	+		PFLU_RS16900	0.25	+0.4
3,831,520	+		PFLU_RS16900	0.25	-0.3
3,831,520	+		PFLU_RS16900	0.25	-2.2
3,831,520	+		PFLU_RS16900	0.25	-1.5
3,831,521	-		PFLU_RS16900	0.25	+1.5
3,831,548	+		PFLU_RS16900	0.28	+0.6
3,831,548	+		PFLU_RS16900	0.28	-2.4
3,831,548	+		PFLU_RS16900	0.28	-2.8
3,831,548	+		PFLU_RS16900	0.28	-0.9
3,831,548	+		PFLU_RS16900	0.28	+2.4
3,831,549	-		PFLU_RS16900	0.28	-2.8
3,831,549	-		PFLU_RS16900	0.28	+2.1
3,831,635	-		PFLU_RS16900	0.38	-3.1
3,831,856	+		PFLU_RS16900	0.63	-1.4
3,831,923	-		PFLU_RS16900	0.70	-1.6
3,831,923	-		PFLU_RS16900	0.70	-2.6
3,831,923	-		PFLU_RS16900	0.70	-0.2
3,831,982	+		PFLU_RS16900	0.77	-0.4
3,831,983	-		PFLU_RS16900	0.77	-1.8
3,831,983	-		PFLU_RS16900	0.77	+0.6
3,832,025	-		PFLU_RS16900	0.82	+0.5
3,832,058	-		PFLU_RS16900	0.86	+1.4
3,832,058	-		PFLU_RS16900	0.86	-3.2
3,832,058	-		PFLU_RS16900	0.86	+0.8
3,832,066	+		PFLU_RS16900	0.86	-1.3
3,832,066	+		PFLU_RS16900	0.86	+1.7
3,832,066	+		PFLU_RS16900	0.86	-1.2
3,832,066	+		PFLU_RS16900	0.86	-0.2
3,832,066	+		PFLU_RS16900	0.86	+0.4
3,832,066	+		PFLU_RS16900	0.86	+2.3
3,832,066	+		PFLU_RS16900	0.86	-0.6
3,832,066	+		PFLU_RS16900	0.86	+1.8
3,832,066	+		PFLU_RS16900	0.86	+0.3
3,832,066	+		PFLU_RS16900	0.86	+0.9
3,832,066	+		PFLU_RS16900	0.86	+1.2
3,832,066	+		PFLU_RS16900	0.86	+0.5
3,832,066	+		PFLU_RS16900	0.86	+2.2
3,832,066	+		PFLU_RS16900	0.86	+0.5
3,832,066	+		PFLU_RS16900	0.86	+0.4
3,832,066	+		PFLU_RS16900	0.86	+1.4
3,832,066	+		PFLU_RS16900	0.86	-1.6
3,832,066	+		PFLU_RS16900	0.86	+1.2
3,832,066	+		PFLU_RS16900	0.86	+1.3
3,832,066	+		PFLU_RS16900	0.86	-0.6
3,832,066	+		PFLU_RS16900	0.86	-1.8
3,832,067	-		PFLU_RS16900	0.87	-0.5
3,832,067	-		PFLU_RS16900	0.87	-1.2
3,832,067	-		PFLU_RS16900	0.87	-0.6
3,832,067	-		PFLU_RS16900	0.87	+0.4
3,832,067	-		PFLU_RS16900	0.87	-2.6
3,832,067	-		PFLU_RS16900	0.87	-1.2
3,832,067	-		PFLU_RS16900	0.87	-1.6
3,832,067	-		PFLU_RS16900	0.87	-0.6
3,832,067	-		PFLU_RS16900	0.87	-1.6
3,832,067	-		PFLU_RS16900	0.87	-0.0
3,832,067	-		PFLU_RS16900	0.87	-0.2
3,832,067	-		PFLU_RS16900	0.87	+0.6
3,832,067	-		PFLU_RS16900	0.87	+0.4
3,832,067	-		PFLU_RS16900	0.87	-2.4
3,832,067	-		PFLU_RS16900	0.87	+2.4
3,832,067	-		PFLU_RS16900	0.87	-1.4
3,832,067	-		PFLU_RS16900	0.87	+0.5
3,832,067	-		PFLU_RS16900	0.87	+1.6
3,832,067	-		PFLU_RS16900	0.87	+1.6
3,832,067	-		PFLU_RS16900	0.87	+3.3
3,832,067	-		PFLU_RS16900	0.87	+1.1
3,832,067	-		PFLU_RS16900	0.87	+0.2
3,832,067	-		PFLU_RS16900	0.87	+3.8
3,832,067	-		PFLU_RS16900	0.87	+1.4
3,832,067	-		PFLU_RS16900	0.87	-0.6
3,832,067	-		PFLU_RS16900	0.87	-0.2
3,832,067	-		PFLU_RS16900	0.87	-0.8
3,832,067	-		PFLU_RS16900	0.87	+1.4
3,832,067	-		PFLU_RS16900	0.87	+1.1
3,832,067	-		PFLU_RS16900	0.87	-0.2
3,832,068	+		PFLU_RS16900	0.87	+0.5
3,832,068	+		PFLU_RS16900	0.87	+1.5
3,832,068	+		PFLU_RS16900	0.87	+0.5
3,832,068	+		PFLU_RS16900	0.87	+2.0
3,832,068	+		PFLU_RS16900	0.87	-0.2
3,832,068	+		PFLU_RS16900	0.87	+1.7
3,832,068	+		PFLU_RS16900	0.87	-0.6
3,832,068	+		PFLU_RS16900	0.87	-0.2
3,832,068	+		PFLU_RS16900	0.87	+1.4
3,832,068	+		PFLU_RS16900	0.87	-2.3
3,832,068	+		PFLU_RS16900	0.87	-2.6
3,832,068	+		PFLU_RS16900	0.87	-1.2
3,832,068	+		PFLU_RS16900	0.87	-0.2
3,832,068	+		PFLU_RS16900	0.87	-1.8
3,832,068	+		PFLU_RS16900	0.87	+1.5
3,832,068	+		PFLU_RS16900	0.87	-3.1
3,832,068	+		PFLU_RS16900	0.87	-3.4
3,832,068	+		PFLU_RS16900	0.87	+1.0
3,832,069	-		PFLU_RS16900	0.87	-2.3
3,832,069	-		PFLU_RS16900	0.87	+0.5
3,832,069	-		PFLU_RS16900	0.87	+0.7
3,832,069	-		PFLU_RS16900	0.87	+0.7
3,832,069	-		PFLU_RS16900	0.87	+1.0
3,832,069	-		PFLU_RS16900	0.87	+0.5
3,832,069	-		PFLU_RS16900	0.87	-0.9
3,832,069	-		PFLU_RS16900	0.87	-2.2
3,832,069	-		PFLU_RS16900	0.87	+0.1
3,832,069	-		PFLU_RS16900	0.87	+2.0
3,832,069	-		PFLU_RS16900	0.87	+1.3
3,832,069	-		PFLU_RS16900	0.87	+0.0
3,832,069	-		PFLU_RS16900	0.87	-0.8
3,832,069	-		PFLU_RS16900	0.87	+1.5
3,832,069	-		PFLU_RS16900	0.87	+0.2
3,832,069	-		PFLU_RS16900	0.87	-0.2
3,832,069	-		PFLU_RS16900	0.87	+2.7
3,832,069	-		PFLU_RS16900	0.87	+1.8
3,832,069	-		PFLU_RS16900	0.87	-2.3
3,832,069	-		PFLU_RS16900	0.87	+2.6
3,832,069	-		PFLU_RS16900	0.87	+2.1
3,832,069	-		PFLU_RS16900	0.87	+0.5
3,832,069	-		PFLU_RS16900	0.87	-0.2
3,832,069	-		PFLU_RS16900	0.87	+1.4
3,832,069	-		PFLU_RS16900	0.87	+0.4
3,832,072	+		PFLU_RS16900	0.87	+0.7
3,832,072	+		PFLU_RS16900	0.87	-0.2
3,832,072	+		PFLU_RS16900	0.87	+0.9
3,832,072	+		PFLU_RS16900	0.87	+0.5
3,832,072	+		PFLU_RS16900	0.87	-1.4
3,832,072	+		PFLU_RS16900	0.87	+1.3
3,832,072	+		PFLU_RS16900	0.87	+0.3
3,832,072	+		PFLU_RS16900	0.87	+1.5
3,832,072	+		PFLU_RS16900	0.87	+0.6
3,832,072	+		PFLU_RS16900	0.87	-2.1
3,832,072	+		PFLU_RS16900	0.87	-0.3
3,832,072	+		PFLU_RS16900	0.87	-2.1
3,832,072	+		PFLU_RS16900	0.87	+0.6
3,832,072	+		PFLU_RS16900	0.87	-2.3
3,832,072	+		PFLU_RS16900	0.87	+2.6
3,832,073	-		PFLU_RS16900	0.87	+0.4
3,832,073	-		PFLU_RS16900	0.87	+1.7
3,832,073	-		PFLU_RS16900	0.87	+1.7
3,832,073	-		PFLU_RS16900	0.87	-1.8
3,832,073	-		PFLU_RS16900	0.87	+0.6
3,832,073	-		PFLU_RS16900	0.87	-3.8
3,832,073	-		PFLU_RS16900	0.87	-0.9
3,832,073	-		PFLU_RS16900	0.87	+1.8
3,832,073	-		PFLU_RS16900	0.87	+0.2
3,832,117	+				+1.1
3,832,118	-				-0.4
3,832,118	-				+0.2
3,832,170	+				+1.3
3,832,170	+				-2.5
3,832,170	+				-1.6
3,832,171	-				+0.4
3,832,171	-				-0.5
3,832,171	-				-1.9
3,832,174	+				-0.6
3,832,174	+				-0.2
3,832,175	-				+0.7
3,832,183	+				+1.7
3,832,194	+				+1.3
3,832,195	-				+1.4
3,832,195	-				+2.8
3,832,227	+				-1.0
3,832,227	+				+0.4
3,832,227	+				+2.6
3,832,227	+				-0.6
3,832,228	-				+0.4
3,832,228	-				+0.0
3,832,228	-				+2.0
3,832,228	-				-1.2
3,832,228	-				+0.4