Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13295

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
3,006,238	+				-1.2
3,006,246	+				-2.0
3,006,246	+				+1.8
3,006,247	-				+0.3
3,006,263	+				-0.2
3,006,263	+				-0.1
3,006,264	-				-1.0
3,006,264	-				-2.7
3,006,264	-				-0.4
3,006,298	+				-2.1
3,006,299	-				-1.0
3,006,319	+				-0.5
3,006,319	+				-1.2
3,006,319	+				+0.1
3,006,319	+				+1.3
3,006,320	-				+1.6
3,006,320	-				+0.1
3,006,320	-				-3.3
3,006,320	-				-2.5
3,006,349	+				+2.2
3,006,349	+				+0.7
3,006,349	+				-0.5
3,006,350	-				-2.8
3,006,350	-				-2.4
3,006,350	-				+3.5
3,006,350	-				+0.8
3,006,350	-				-0.9
3,006,350	-				-0.8
3,006,350	-				+2.2
3,006,350	-				+1.3
3,006,350	-				+0.3
3,006,350	-				-1.8
3,006,351	+				+1.6
3,006,351	+				-2.7
3,006,461	+				-1.0
3,006,461	+				+1.9
3,006,462	-				+1.0
3,006,462	-				-1.0
3,006,462	-				+0.8
3,006,698	+		PFLU_RS13290	0.42	-2.2
3,006,698	+		PFLU_RS13290	0.42	+0.6
3,006,699	-		PFLU_RS13290	0.42	+1.9
3,006,699	-		PFLU_RS13290	0.42	+1.8
3,006,699	-		PFLU_RS13290	0.42	-1.2
3,006,699	-		PFLU_RS13290	0.42	-1.7
3,006,745	+		PFLU_RS13290	0.49	-1.7
3,006,745	+		PFLU_RS13290	0.49	-0.2
3,006,745	+		PFLU_RS13290	0.49	-3.5
3,006,745	+		PFLU_RS13290	0.49	+0.3
3,006,745	+		PFLU_RS13290	0.49	-2.4
3,006,746	-		PFLU_RS13290	0.49	-0.1
3,006,746	-		PFLU_RS13290	0.49	-2.5
3,006,746	-		PFLU_RS13290	0.49	+1.9
3,006,746	-		PFLU_RS13290	0.49	+1.9
3,006,746	-		PFLU_RS13290	0.49	+0.5
3,006,746	-		PFLU_RS13290	0.49	+0.7
3,006,881	+		PFLU_RS13290	0.68	+0.3
3,006,881	+		PFLU_RS13290	0.68	+2.2
3,006,881	+		PFLU_RS13290	0.68	-3.3
3,006,881	+		PFLU_RS13290	0.68	+1.7
3,006,881	+		PFLU_RS13290	0.68	+0.4
3,006,881	+		PFLU_RS13290	0.68	-0.2
3,006,881	+		PFLU_RS13290	0.68	-0.7
3,006,881	+		PFLU_RS13290	0.68	-1.5
3,006,882	-		PFLU_RS13290	0.68	-0.3
3,006,882	-		PFLU_RS13290	0.68	-0.7
3,006,993	+		PFLU_RS13290	0.84	+0.3
3,006,993	+		PFLU_RS13290	0.84	+0.5
3,006,993	+		PFLU_RS13290	0.84	+0.8
3,006,993	+		PFLU_RS13290	0.84	+1.2
3,006,993	+		PFLU_RS13290	0.84	+1.9
3,006,993	+		PFLU_RS13290	0.84	-1.8
3,006,993	+		PFLU_RS13290	0.84	-1.2
3,006,993	+		PFLU_RS13290	0.84	+1.6
3,006,993	+		PFLU_RS13290	0.84	+0.1
3,006,993	+		PFLU_RS13290	0.84	-3.2
3,006,994	-		PFLU_RS13290	0.84	+1.5
3,006,994	-		PFLU_RS13290	0.84	+1.0
3,006,994	-		PFLU_RS13290	0.84	+0.3
3,006,994	-		PFLU_RS13290	0.84	-1.2
3,006,994	-		PFLU_RS13290	0.84	+1.1
3,006,994	-		PFLU_RS13290	0.84	+0.5
3,006,994	-		PFLU_RS13290	0.84	-1.2
3,006,994	-		PFLU_RS13290	0.84	-0.2
3,006,994	-		PFLU_RS13290	0.84	-2.0
3,006,994	-		PFLU_RS13290	0.84	-1.9
3,006,994	-		PFLU_RS13290	0.84	+1.1
3,006,994	-		PFLU_RS13290	0.84	-1.2
3,006,994	-		PFLU_RS13290	0.84	-1.9
3,006,994	-		PFLU_RS13290	0.84	-1.5
3,007,073	+				+1.3
3,007,119	+				+0.9
3,007,133	+				-2.0
3,007,133	+				+1.2
3,007,133	+				+0.9
3,007,133	+				-1.0
3,007,133	+				+1.5
3,007,134	-				+0.9
3,007,154	+				-2.0
3,007,154	+				+0.5
3,007,154	+				+2.2
3,007,154	+				-0.5
3,007,155	-				+1.3
3,007,155	-				-0.1
3,007,155	-				+0.3
3,007,155	-				+1.3
3,007,155	-				+0.0
3,007,155	-				-0.2
3,007,155	-				+0.3
3,007,169	+				+1.4
3,007,169	+				+0.3
3,007,169	+				+0.3
3,007,169	+				+2.9
3,007,170	-				+0.3
3,007,170	-				-1.2
3,007,170	-				+1.6
3,007,211	+				+0.2
3,007,212	-				-1.0
3,007,212	-				+0.1
3,007,212	-				+0.8
3,007,212	-				+1.3
3,007,212	-				+1.3
3,007,220	+				+0.1
3,007,220	+				+0.8
3,007,220	+				+0.7
3,007,220	+				-0.5
3,007,220	+				+0.8
3,007,220	+				+0.1
3,007,220	+				+1.3
3,007,220	+				-2.7
3,007,220	+				-0.7
3,007,220	+				+0.6
3,007,221	-				-0.2
3,007,221	-				-1.5
3,007,221	-				-0.7
3,007,221	-				-1.0
3,007,221	-				+0.1
3,007,221	-				+0.3
3,007,221	-				-2.6
3,007,269	-		PFLU_RS13295	0.12	-0.7
3,007,269	-		PFLU_RS13295	0.12	+0.2
3,007,269	-		PFLU_RS13295	0.12	+1.8
3,007,370	+		PFLU_RS13295	0.20	-1.5
3,007,370	+		PFLU_RS13295	0.20	+4.9
3,007,370	+		PFLU_RS13295	0.20	+2.1
3,007,370	+		PFLU_RS13295	0.20	+1.3
3,007,370	+		PFLU_RS13295	0.20	+0.8
3,007,370	+		PFLU_RS13295	0.20	+2.3
3,007,370	+		PFLU_RS13295	0.20	+3.2
3,007,370	+		PFLU_RS13295	0.20	-2.5
3,007,371	-		PFLU_RS13295	0.20	-0.7
3,007,371	-		PFLU_RS13295	0.20	-1.7
3,007,371	-		PFLU_RS13295	0.20	+0.2
3,007,371	-		PFLU_RS13295	0.20	-2.1
3,007,371	-		PFLU_RS13295	0.20	+2.5
3,007,372	+		PFLU_RS13295	0.20	-2.1
3,007,372	+		PFLU_RS13295	0.20	-1.7
3,007,373	-		PFLU_RS13295	0.20	+0.5
3,007,373	-		PFLU_RS13295	0.20	+0.3
3,007,373	-		PFLU_RS13295	0.20	+0.3
3,007,523	+		PFLU_RS13295	0.32	+0.7
3,007,523	+		PFLU_RS13295	0.32	-0.2
3,007,524	-		PFLU_RS13295	0.32	+0.6
3,007,524	-		PFLU_RS13295	0.32	-1.2
3,007,524	-		PFLU_RS13295	0.32	+1.4
3,007,524	-		PFLU_RS13295	0.32	-0.8
3,007,919	+		PFLU_RS13295	0.62	+2.2
3,008,252	+		PFLU_RS13295	0.88	+0.3
3,008,252	+		PFLU_RS13295	0.88	+1.2
3,008,253	-		PFLU_RS13295	0.88	+2.0
3,008,639	+		PFLU_RS13300	0.34	+2.2
3,008,640	-		PFLU_RS13300	0.34	+1.3
3,008,640	-		PFLU_RS13300	0.34	-0.2
3,008,640	-		PFLU_RS13300	0.34	-0.7
3,008,640	-		PFLU_RS13300	0.34	+2.7
3,008,797	+		PFLU_RS13300	0.58	-1.2
3,008,976	-		PFLU_RS13300	0.84	+2.2
3,008,976	-		PFLU_RS13300	0.84	+0.9
3,009,045	+				-1.8
3,009,045	+				-0.2
3,009,045	+				-2.8
3,009,046	-				+0.2
3,009,046	-				-0.5
3,009,108	+				-0.7
3,009,108	+				+1.5
3,009,176	+		PFLU_RS13305	0.19	-1.1
3,009,188	+		PFLU_RS13305	0.22	+1.9
3,009,188	+		PFLU_RS13305	0.22	+0.5
3,009,188	+		PFLU_RS13305	0.22	+1.5
3,009,188	+		PFLU_RS13305	0.22	-0.7
3,009,188	+		PFLU_RS13305	0.22	+1.3
3,009,188	+		PFLU_RS13305	0.22	+0.7
3,009,189	-		PFLU_RS13305	0.22	+0.8
3,009,333	+		PFLU_RS13305	0.50	+0.3
3,009,334	-		PFLU_RS13305	0.50	-2.4