Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12635

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
2,853,633	+		PFLU_RS12630	0.48	+1.4
2,853,633	+		PFLU_RS12630	0.48	+1.4
2,853,634	-		PFLU_RS12630	0.48	-1.0
2,853,634	-		PFLU_RS12630	0.48	+1.4
2,853,634	-		PFLU_RS12630	0.48	+0.2
2,853,636	+		PFLU_RS12630	0.48	-0.6
2,853,637	-		PFLU_RS12630	0.48	-2.1
2,853,637	-		PFLU_RS12630	0.48	-1.5
2,853,637	-		PFLU_RS12630	0.48	-2.2
2,853,637	-		PFLU_RS12630	0.48	+0.1
2,853,675	+		PFLU_RS12630	0.52	+0.4
2,853,675	+		PFLU_RS12630	0.52	+0.6
2,853,710	+		PFLU_RS12630	0.56	-0.5
2,853,710	+		PFLU_RS12630	0.56	+0.6
2,853,710	+		PFLU_RS12630	0.56	-2.2
2,853,710	+		PFLU_RS12630	0.56	+0.9
2,853,710	+		PFLU_RS12630	0.56	-1.4
2,853,711	-		PFLU_RS12630	0.56	-0.2
2,853,711	-		PFLU_RS12630	0.56	-1.5
2,853,711	-		PFLU_RS12630	0.56	-1.6
2,853,762	+		PFLU_RS12630	0.61	-2.9
2,853,763	-		PFLU_RS12630	0.61	-3.3
2,853,763	-		PFLU_RS12630	0.61	+0.8
2,853,771	+		PFLU_RS12630	0.62	+1.2
2,853,771	+		PFLU_RS12630	0.62	-0.1
2,853,771	+		PFLU_RS12630	0.62	-0.6
2,853,771	+		PFLU_RS12630	0.62	+0.7
2,853,771	+		PFLU_RS12630	0.62	-3.2
2,853,771	+		PFLU_RS12630	0.62	-1.4
2,853,771	+		PFLU_RS12630	0.62	+2.4
2,853,771	+		PFLU_RS12630	0.62	-2.4
2,853,771	+		PFLU_RS12630	0.62	+0.4
2,853,771	+		PFLU_RS12630	0.62	-1.0
2,853,772	-		PFLU_RS12630	0.62	-0.2
2,853,772	-		PFLU_RS12630	0.62	-0.2
2,853,772	-		PFLU_RS12630	0.62	-2.7
2,853,772	-		PFLU_RS12630	0.62	-2.2
2,853,772	-		PFLU_RS12630	0.62	+0.4
2,853,772	-		PFLU_RS12630	0.62	-1.4
2,853,772	-		PFLU_RS12630	0.62	+0.6
2,853,772	-		PFLU_RS12630	0.62	+0.4
2,853,772	-		PFLU_RS12630	0.62	-1.8
2,853,772	-		PFLU_RS12630	0.62	-0.6
2,853,772	-		PFLU_RS12630	0.62	-1.0
2,853,772	-		PFLU_RS12630	0.62	+0.5
2,853,777	+		PFLU_RS12630	0.62	-2.3
2,853,777	+		PFLU_RS12630	0.62	+0.4
2,853,777	+		PFLU_RS12630	0.62	+1.4
2,853,777	+		PFLU_RS12630	0.62	+1.5
2,853,777	+		PFLU_RS12630	0.62	+2.0
2,853,777	+		PFLU_RS12630	0.62	+0.8
2,853,777	+		PFLU_RS12630	0.62	-1.4
2,853,777	+		PFLU_RS12630	0.62	+0.5
2,853,778	-		PFLU_RS12630	0.62	-1.4
2,853,778	-		PFLU_RS12630	0.62	+0.7
2,853,849	+		PFLU_RS12630	0.69	-1.4
2,853,849	+		PFLU_RS12630	0.69	-1.4
2,853,849	+		PFLU_RS12630	0.69	+1.9
2,853,850	-		PFLU_RS12630	0.69	-0.6
2,853,850	-		PFLU_RS12630	0.69	-1.0
2,853,936	+		PFLU_RS12630	0.78	+2.4
2,853,936	+		PFLU_RS12630	0.78	-0.4
2,853,936	+		PFLU_RS12630	0.78	+0.8
2,853,936	+		PFLU_RS12630	0.78	-2.2
2,853,937	-		PFLU_RS12630	0.78	-2.2
2,853,937	-		PFLU_RS12630	0.78	+0.9
2,853,937	-		PFLU_RS12630	0.78	-1.4
2,853,937	-		PFLU_RS12630	0.78	-0.4
2,853,937	-		PFLU_RS12630	0.78	+0.2
2,853,937	-		PFLU_RS12630	0.78	+0.8
2,854,010	+		PFLU_RS12630	0.85	-1.2
2,854,055	+		PFLU_RS12630	0.89	-0.6
2,854,055	+		PFLU_RS12630	0.89	-0.5
2,854,077	+				-2.3
2,854,077	+				-0.2
2,854,077	+				-0.8
2,854,077	+				+0.4
2,854,077	+				-0.1
2,854,077	+				-0.2
2,854,077	+				-0.2
2,854,077	+				-3.0
2,854,077	+				-1.3
2,854,077	+				+2.0
2,854,077	+				+0.3
2,854,077	+				+1.2
2,854,078	-				-0.4
2,854,078	-				-1.4
2,854,078	-				-0.2
2,854,078	-				+0.9
2,854,078	-				-1.2
2,854,078	-				-0.8
2,854,078	-				+0.8
2,854,080	-				+0.8
2,854,173	-				-1.0
2,854,173	-				-1.5
2,854,289	+				-1.2
2,854,289	+				+2.5
2,854,289	+				-1.4
2,854,290	-				+0.2
2,854,290	-				-2.4
2,854,290	-				-1.0
2,854,290	-				-2.1
2,854,290	-				-0.8
2,854,290	-				-1.8
2,854,290	-				+0.8
2,854,303	-				+0.9
2,854,317	+				-0.2
2,854,317	+				+1.4
2,854,317	+				-0.6
2,854,317	+				+1.4
2,854,317	+				-2.0
2,854,317	+				+1.7
2,854,317	+				+1.1
2,854,317	+				-1.0
2,854,317	+				+0.6
2,854,317	+				+2.3
2,854,317	+				-1.0
2,854,317	+				+1.5
2,854,317	+				-0.2
2,854,317	+				+1.2
2,854,317	+				+0.4
2,854,317	+				+0.4
2,854,317	+				-1.6
2,854,318	-				+1.8
2,854,318	-				+1.5
2,854,318	-				+1.1
2,854,318	-				-2.5
2,854,318	-				+0.6
2,854,318	-				-1.3
2,854,318	-				+0.4
2,854,318	-				-1.0
2,854,318	-				-0.0
2,854,318	-				-2.4
2,854,318	-				-0.0
2,854,318	-				+0.0
2,854,318	-				-2.1
2,854,318	-				+1.4
2,854,318	-				-2.0
2,854,318	-				+1.4
2,854,319	+				+0.1
2,854,319	+				+0.4
2,854,319	+				-1.4
2,854,319	+				-1.8
2,854,319	+				-1.2
2,854,319	+				+3.4
2,854,319	+				-1.0
2,854,319	+				-1.0
2,854,319	+				-1.4
2,854,320	-				+1.1
2,854,320	-				-3.0
2,854,320	-				+0.5
2,854,320	-				-0.1
2,854,321	+				-1.2
2,854,321	+				+0.5
2,854,321	+				+0.4
2,854,321	+				-1.4
2,854,321	+				+3.4
2,854,321	+				-0.6
2,854,321	+				+2.7
2,854,321	+				-1.4
2,854,321	+				+4.2
2,854,321	+				+3.4
2,854,321	+				+0.7
2,854,322	-				-0.6
2,854,322	-				+2.4
2,854,322	-				+0.6
2,854,322	-				-1.4
2,854,322	-				-2.0
2,854,322	-				+1.1
2,854,322	-				-0.2
2,854,322	-				-2.9
2,854,322	-				+1.4
2,854,322	-				-0.8
2,854,322	-				+0.1
2,854,322	-				+0.9
2,854,322	-				-2.9
2,854,322	-				+1.7
2,854,322	-				-1.2
2,854,322	-				-1.0
2,854,322	-				-1.1
2,854,322	-				+2.6
2,854,322	-				+0.7
2,854,322	-				+0.8
2,854,347	+				+1.2
2,854,347	+				-1.1
2,854,347	+				-0.2
2,854,347	+				+2.7
2,854,347	+				+1.0
2,854,347	+				+1.8
2,854,349	+				-1.8
2,854,349	+				-2.3
2,854,350	-				+1.8
2,854,350	-				-1.2
2,854,350	-				+0.1
2,854,350	-				-1.1
2,854,401	+				-0.3
2,854,453	+				-2.2
2,854,470	+				-2.3
2,854,547	-				+0.5
2,854,623	+				-1.6
2,854,623	+				-2.1
2,854,623	+				-0.6
2,854,623	+				-1.8
2,854,623	+				+2.7
2,854,623	+				+1.4
2,854,623	+				+0.5
2,854,623	+				-1.2
2,854,623	+				-1.0
2,854,623	+				-2.3
2,854,624	-				+0.0
2,854,624	-				+1.5
2,854,624	-				+1.2
2,854,624	-				-1.0
2,854,624	-				+0.7
2,854,624	-				+2.8
2,854,624	-				-0.2
2,854,624	-				+0.1
2,854,889	+		PFLU_RS12635	0.75	+0.4
2,854,929	+		PFLU_RS12635	0.85	+0.1
2,854,929	+		PFLU_RS12635	0.85	+0.9
2,854,929	+		PFLU_RS12635	0.85	+2.3
2,855,040	+				+0.6
2,855,051	+				-2.0
2,855,052	-				+0.8
2,855,052	-				-1.0
2,855,052	-				-0.4
2,855,052	-				+0.4
2,855,069	+				-2.6
2,855,261	+				+1.0
2,855,262	-				+2.2
2,855,262	-				+1.2
2,855,262	-				-1.8
2,855,262	-				-0.1
2,855,262	-				-2.5
2,855,296	+				+1.6
2,855,296	+				-0.5
2,855,296	+				+0.2
2,855,297	-				+2.6
2,855,297	-				+1.7
2,855,361	+		PFLU_RS12640	0.12	+2.0
2,855,459	-		PFLU_RS12640	0.18	+0.9
2,855,925	+		PFLU_RS12640	0.47	-0.0
2,855,926	-		PFLU_RS12640	0.47	+1.1
2,855,939	+		PFLU_RS12640	0.48	-0.2
2,855,939	+		PFLU_RS12640	0.48	+0.4
2,855,939	+		PFLU_RS12640	0.48	-3.0
2,855,940	-		PFLU_RS12640	0.48	-1.4
2,855,940	-		PFLU_RS12640	0.48	+0.6