Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12535

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
2,828,104	+		PFLU_RS12530	0.15	+0.4
2,828,104	+		PFLU_RS12530	0.15	-1.9
2,828,104	+		PFLU_RS12530	0.15	+1.6
2,828,104	+		PFLU_RS12530	0.15	-2.9
2,828,104	+		PFLU_RS12530	0.15	-1.8
2,828,105	-		PFLU_RS12530	0.15	+1.1
2,828,105	-		PFLU_RS12530	0.15	-0.5
2,828,105	-		PFLU_RS12530	0.15	+0.7
2,828,105	-		PFLU_RS12530	0.15	+0.0
2,828,105	-		PFLU_RS12530	0.15	-1.4
2,828,105	-		PFLU_RS12530	0.15	-0.6
2,828,168	+		PFLU_RS12530	0.22	+0.4
2,828,168	+		PFLU_RS12530	0.22	-0.9
2,828,168	+		PFLU_RS12530	0.22	-0.2
2,828,168	+		PFLU_RS12530	0.22	-1.8
2,828,169	-		PFLU_RS12530	0.22	-0.9
2,828,169	-		PFLU_RS12530	0.22	+0.4
2,828,169	-		PFLU_RS12530	0.22	+0.4
2,828,169	-		PFLU_RS12530	0.22	-0.6
2,828,169	-		PFLU_RS12530	0.22	-0.9
2,828,169	-		PFLU_RS12530	0.22	-2.9
2,828,169	-		PFLU_RS12530	0.22	-1.2
2,828,427	+		PFLU_RS12530	0.51	+0.4
2,828,427	+		PFLU_RS12530	0.51	-0.4
2,828,427	+		PFLU_RS12530	0.51	-1.6
2,828,427	+		PFLU_RS12530	0.51	-0.0
2,828,427	+		PFLU_RS12530	0.51	-2.4
2,828,428	-		PFLU_RS12530	0.51	+1.4
2,828,428	-		PFLU_RS12530	0.51	-2.3
2,828,428	-		PFLU_RS12530	0.51	-0.6
2,828,428	-		PFLU_RS12530	0.51	+2.4
2,828,428	-		PFLU_RS12530	0.51	+0.4
2,828,431	+		PFLU_RS12530	0.52	+1.4
2,828,431	+		PFLU_RS12530	0.52	-1.2
2,828,431	+		PFLU_RS12530	0.52	-2.8
2,828,431	+		PFLU_RS12530	0.52	+0.5
2,828,431	+		PFLU_RS12530	0.52	-1.6
2,828,432	-		PFLU_RS12530	0.52	-2.4
2,828,432	-		PFLU_RS12530	0.52	+1.7
2,828,432	-		PFLU_RS12530	0.52	+2.6
2,828,432	-		PFLU_RS12530	0.52	-1.6
2,828,432	-		PFLU_RS12530	0.52	-1.2
2,828,432	-		PFLU_RS12530	0.52	+0.4
2,828,432	-		PFLU_RS12530	0.52	+0.2
2,828,432	-		PFLU_RS12530	0.52	+0.0
2,828,606	+		PFLU_RS12530	0.71	-3.4
2,828,606	+		PFLU_RS12530	0.71	+1.9
2,828,606	+		PFLU_RS12530	0.71	+0.8
2,828,606	+		PFLU_RS12530	0.71	-2.1
2,828,606	+		PFLU_RS12530	0.71	+0.7
2,828,606	+		PFLU_RS12530	0.71	-0.6
2,828,607	-		PFLU_RS12530	0.72	+1.7
2,828,607	-		PFLU_RS12530	0.72	-1.8
2,828,607	-		PFLU_RS12530	0.72	+2.5
2,828,607	-		PFLU_RS12530	0.72	+0.9
2,828,699	+		PFLU_RS12530	0.82	-1.2
2,828,699	+		PFLU_RS12530	0.82	+2.5
2,828,699	+		PFLU_RS12530	0.82	+2.0
2,828,700	-		PFLU_RS12530	0.82	+1.6
2,828,768	+		PFLU_RS12530	0.90	-0.2
2,828,769	-		PFLU_RS12530	0.90	+0.6
2,828,834	-				-1.6
2,828,834	-				+0.4
2,828,880	+				+1.0
2,828,880	+				+0.1
2,828,881	-				-3.1
2,828,881	-				+1.7
2,828,881	-				+1.5
2,828,881	-				+1.2
2,828,881	-				+0.4
2,828,881	-				-0.9
2,828,911	+				+2.2
2,828,911	+				-1.6
2,828,911	+				+0.2
2,828,911	+				-1.4
2,828,911	+				+0.1
2,828,912	-				+1.4
2,828,912	-				-0.2
2,828,912	-				-1.2
2,828,939	+				-0.2
2,828,939	+				-1.9
2,828,939	+				+0.4
2,828,939	+				+1.6
2,828,939	+				+0.6
2,828,940	-				+1.4
2,828,940	-				-1.8
2,828,940	-				-0.4
2,828,940	-				-1.4
2,828,960	+				+2.1
2,828,960	+				+1.4
2,828,960	+				-0.7
2,828,960	+				-2.4
2,828,960	+				-0.9
2,828,961	-				+0.7
2,828,961	-				-0.8
2,828,961	-				+1.0
2,829,068	+				-0.6
2,829,153	+				+2.1
2,829,153	+				-0.3
2,829,153	+				+0.6
2,829,153	+				+1.4
2,829,153	+				+0.6
2,829,153	+				-0.9
2,829,153	+				+1.0
2,829,154	-				+1.0
2,829,154	-				-0.0
2,829,154	-				-0.9
2,829,154	-				+1.4
2,829,154	-				-1.4
2,829,168	+				-2.2
2,829,168	+				+1.6
2,829,168	+				-2.2
2,829,169	-				+2.1
2,829,225	+		PFLU_RS12535	0.14	+1.4
2,829,233	-		PFLU_RS12535	0.15	-0.6
2,829,233	-		PFLU_RS12535	0.15	-1.2
2,829,233	-		PFLU_RS12535	0.15	+1.2
2,829,286	-		PFLU_RS12535	0.20	-1.8
2,829,474	+		PFLU_RS12535	0.37	-0.9
2,829,474	+		PFLU_RS12535	0.37	-1.2
2,829,475	-		PFLU_RS12535	0.37	+2.4
2,829,624	+		PFLU_RS12535	0.51	+2.0
2,829,624	+		PFLU_RS12535	0.51	-1.6
2,829,624	+		PFLU_RS12535	0.51	+1.8
2,829,625	-		PFLU_RS12535	0.51	-1.2
2,829,625	-		PFLU_RS12535	0.51	+1.1
2,829,663	+		PFLU_RS12535	0.55	-3.0
2,829,663	+		PFLU_RS12535	0.55	-1.4
2,829,663	+		PFLU_RS12535	0.55	+1.2
2,829,663	+		PFLU_RS12535	0.55	+1.0
2,829,663	+		PFLU_RS12535	0.55	-0.9
2,829,664	-		PFLU_RS12535	0.55	+1.4
2,829,664	-		PFLU_RS12535	0.55	-1.4
2,829,664	-		PFLU_RS12535	0.55	+0.1
2,829,664	-		PFLU_RS12535	0.55	+1.2
2,829,664	-		PFLU_RS12535	0.55	+0.9
2,829,664	-		PFLU_RS12535	0.55	+1.6
2,829,702	+		PFLU_RS12535	0.58	-1.9
2,829,702	+		PFLU_RS12535	0.58	+0.4
2,829,702	+		PFLU_RS12535	0.58	-0.2
2,829,702	+		PFLU_RS12535	0.58	+2.3
2,829,702	+		PFLU_RS12535	0.58	-2.1
2,829,702	+		PFLU_RS12535	0.58	+1.5
2,829,702	+		PFLU_RS12535	0.58	+2.2
2,829,702	+		PFLU_RS12535	0.58	+3.7
2,829,703	-		PFLU_RS12535	0.58	-0.9
2,829,711	+		PFLU_RS12535	0.59	-0.4
2,829,711	+		PFLU_RS12535	0.59	-2.2
2,829,711	+		PFLU_RS12535	0.59	+1.8
2,829,711	+		PFLU_RS12535	0.59	-1.2
2,829,711	+		PFLU_RS12535	0.59	+1.6
2,829,712	-		PFLU_RS12535	0.59	-1.8
2,829,712	-		PFLU_RS12535	0.59	-1.9
2,829,712	-		PFLU_RS12535	0.59	+1.1
2,829,712	-		PFLU_RS12535	0.59	+0.2
2,829,712	-		PFLU_RS12535	0.59	+1.1
2,829,712	-		PFLU_RS12535	0.59	+0.9
2,829,712	-		PFLU_RS12535	0.59	+1.4
2,829,712	-		PFLU_RS12535	0.59	+0.4
2,829,729	+		PFLU_RS12535	0.61	+0.4
2,829,729	+		PFLU_RS12535	0.61	-0.4
2,829,729	+		PFLU_RS12535	0.61	-2.2
2,829,729	+		PFLU_RS12535	0.61	+3.1
2,829,729	+		PFLU_RS12535	0.61	-0.9
2,829,729	+		PFLU_RS12535	0.61	-0.6
2,829,729	+		PFLU_RS12535	0.61	+3.1
2,829,729	+		PFLU_RS12535	0.61	-1.4
2,829,730	-		PFLU_RS12535	0.61	-0.8
2,829,730	-		PFLU_RS12535	0.61	+1.6
2,829,730	-		PFLU_RS12535	0.61	+2.2
2,829,730	-		PFLU_RS12535	0.61	+1.1
2,829,730	-		PFLU_RS12535	0.61	+1.3
2,829,755	+		PFLU_RS12535	0.63	-0.9
2,829,756	-		PFLU_RS12535	0.63	+1.8
2,829,756	-		PFLU_RS12535	0.63	-0.9
2,829,756	-		PFLU_RS12535	0.63	+2.7
2,829,936	+		PFLU_RS12535	0.80	+1.4
2,829,936	+		PFLU_RS12535	0.80	+1.4
2,829,936	+		PFLU_RS12535	0.80	+0.8
2,829,937	-		PFLU_RS12535	0.80	+2.0
2,829,937	-		PFLU_RS12535	0.80	+2.4
2,829,937	-		PFLU_RS12535	0.80	+0.1
2,829,937	-		PFLU_RS12535	0.80	-1.9
2,829,937	-		PFLU_RS12535	0.80	-2.4
2,829,937	-		PFLU_RS12535	0.80	-0.6
2,829,984	+		PFLU_RS12535	0.84	-1.6
2,829,984	+		PFLU_RS12535	0.84	+0.9
2,829,985	-		PFLU_RS12535	0.84	-0.2
2,830,080	+				+0.6
2,830,081	-				+0.2
2,830,081	-				+0.4
2,830,081	-				+1.0
2,830,151	+				+1.4
2,830,151	+				+1.3
2,830,151	+				-1.4
2,830,151	+				+0.8
2,830,151	+				-2.8
2,830,152	-				+1.8
2,830,152	-				-0.8
2,830,152	-				+2.4
2,830,184	+				+0.5
2,830,185	-				-2.4
2,830,185	-				+3.3
2,830,185	-				-1.6
2,830,320	+		PFLU_RS12540	0.13	-2.7
2,830,321	-		PFLU_RS12540	0.13	+1.0
2,830,446	-		PFLU_RS12540	0.23	-1.2
2,830,446	-		PFLU_RS12540	0.23	+0.7
2,830,607	+		PFLU_RS12540	0.35	-0.8
2,830,607	+		PFLU_RS12540	0.35	+2.1
2,830,608	-		PFLU_RS12540	0.35	+0.4
2,830,670	+		PFLU_RS12540	0.40	-0.1
2,830,670	+		PFLU_RS12540	0.40	-1.2
2,830,670	+		PFLU_RS12540	0.40	-0.3
2,830,670	+		PFLU_RS12540	0.40	+3.4
2,830,670	+		PFLU_RS12540	0.40	-2.7
2,830,670	+		PFLU_RS12540	0.40	-1.9
2,830,670	+		PFLU_RS12540	0.40	+2.5
2,830,671	-		PFLU_RS12540	0.40	+1.2
2,830,671	-		PFLU_RS12540	0.40	-1.8
2,830,671	-		PFLU_RS12540	0.40	+1.3
2,830,671	-		PFLU_RS12540	0.40	-1.0
2,830,671	-		PFLU_RS12540	0.40	+0.5
2,830,671	-		PFLU_RS12540	0.40	+1.5
2,830,671	-		PFLU_RS12540	0.40	-1.9
2,830,671	-		PFLU_RS12540	0.40	-1.6
2,830,671	-		PFLU_RS12540	0.40	-1.6
2,830,671	-		PFLU_RS12540	0.40	+1.2
2,830,726	-		PFLU_RS12540	0.44	+0.2
2,830,726	-		PFLU_RS12540	0.44	-0.4
2,830,726	-		PFLU_RS12540	0.44	-1.2
2,830,928	+		PFLU_RS12540	0.60	-1.6
2,830,928	+		PFLU_RS12540	0.60	-2.2
2,830,928	+		PFLU_RS12540	0.60	+2.3
2,830,928	+		PFLU_RS12540	0.60	+0.8
2,830,928	+		PFLU_RS12540	0.60	-0.6
2,830,928	+		PFLU_RS12540	0.60	-0.9
2,830,928	+		PFLU_RS12540	0.60	+1.6
2,830,928	+		PFLU_RS12540	0.60	-1.9
2,830,928	+		PFLU_RS12540	0.60	+0.4
2,830,928	+		PFLU_RS12540	0.60	+2.4
2,830,928	+		PFLU_RS12540	0.60	-1.4
2,830,929	-		PFLU_RS12540	0.60	-0.6
2,830,929	-		PFLU_RS12540	0.60	+1.2
2,830,929	-		PFLU_RS12540	0.60	-0.5
2,830,929	-		PFLU_RS12540	0.60	+1.9
2,830,929	-		PFLU_RS12540	0.60	-2.9
2,830,929	-		PFLU_RS12540	0.60	-3.1
2,830,929	-		PFLU_RS12540	0.60	-1.6
2,830,929	-		PFLU_RS12540	0.60	-0.9
2,830,929	-		PFLU_RS12540	0.60	+0.0
2,830,929	-		PFLU_RS12540	0.60	+1.1
2,830,929	-		PFLU_RS12540	0.60	+1.8
2,830,929	-		PFLU_RS12540	0.60	+0.4
2,830,929	-		PFLU_RS12540	0.60	+1.4
2,830,929	-		PFLU_RS12540	0.60	+1.8
2,830,929	-		PFLU_RS12540	0.60	+1.5
2,830,929	-		PFLU_RS12540	0.60	+0.8
2,830,929	-		PFLU_RS12540	0.60	+0.7
2,830,929	-		PFLU_RS12540	0.60	-0.9
2,830,929	-		PFLU_RS12540	0.60	+3.7
2,831,021	+		PFLU_RS12540	0.67	+3.4
2,831,021	+		PFLU_RS12540	0.67	+1.0
2,831,021	+		PFLU_RS12540	0.67	+0.5
2,831,021	+		PFLU_RS12540	0.67	-0.4
2,831,021	+		PFLU_RS12540	0.67	+0.4
2,831,021	+		PFLU_RS12540	0.67	+0.3
2,831,022	-		PFLU_RS12540	0.67	+2.8
2,831,073	-		PFLU_RS12540	0.71	+2.2
2,831,105	+		PFLU_RS12540	0.73	-1.2
2,831,105	+		PFLU_RS12540	0.73	-0.7
2,831,105	+		PFLU_RS12540	0.73	+2.1
2,831,105	+		PFLU_RS12540	0.73	+0.2
2,831,105	+		PFLU_RS12540	0.73	-1.2
2,831,105	+		PFLU_RS12540	0.73	-0.9
2,831,106	-		PFLU_RS12540	0.73	-0.2
2,831,106	-		PFLU_RS12540	0.73	+3.0
2,831,106	-		PFLU_RS12540	0.73	+1.6
2,831,106	-		PFLU_RS12540	0.73	-0.2
2,831,107	+		PFLU_RS12540	0.74	+1.7
2,831,107	+		PFLU_RS12540	0.74	-1.1
2,831,107	+		PFLU_RS12540	0.74	-1.6
2,831,107	+		PFLU_RS12540	0.74	-2.4
2,831,107	+		PFLU_RS12540	0.74	-0.9
2,831,107	+		PFLU_RS12540	0.74	+0.2
2,831,108	-		PFLU_RS12540	0.74	+0.9
2,831,108	-		PFLU_RS12540	0.74	+1.5
2,831,108	-		PFLU_RS12540	0.74	+3.0
2,831,108	-		PFLU_RS12540	0.74	-2.3
2,831,108	-		PFLU_RS12540	0.74	+2.1
2,831,108	-		PFLU_RS12540	0.74	-1.0
2,831,108	-		PFLU_RS12540	0.74	-0.2