Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS10055

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
2,216,504	+				-1.0
2,216,505	-				+0.7
2,216,585	+				-0.5
2,216,585	+				-0.8
2,216,585	+				-0.5
2,216,585	+				-2.9
2,216,585	+				-1.5
2,216,585	+				-1.3
2,216,586	-				-0.3
2,216,586	-				-2.0
2,216,586	-				-0.0
2,216,586	-				+0.3
2,216,811	-		PFLU_RS10045	0.36	-0.8
2,216,978	+		PFLU_RS10045	0.65	-2.5
2,216,979	-		PFLU_RS10045	0.66	-0.2
2,216,979	-		PFLU_RS10045	0.66	-0.8
2,216,979	-		PFLU_RS10045	0.66	+0.5
2,216,979	-		PFLU_RS10045	0.66	-1.5
2,216,979	-		PFLU_RS10045	0.66	+0.9
2,216,979	-		PFLU_RS10045	0.66	+0.7
2,217,119	+				-1.3
2,217,119	+				-1.9
2,217,119	+				+0.5
2,217,119	+				+1.5
2,217,120	-				-0.5
2,217,120	-				+1.1
2,217,120	-				-0.2
2,217,120	-				+0.5
2,217,120	-				-1.8
2,217,120	-				+1.1
2,217,120	-				-0.6
2,217,151	+				+1.5
2,217,151	+				+1.7
2,217,151	+				+0.8
2,217,151	+				+0.8
2,217,151	+				+2.4
2,217,151	+				-0.0
2,217,151	+				+1.2
2,217,151	+				-1.0
2,217,152	-				-2.5
2,217,152	-				-0.9
2,217,165	+				-0.2
2,217,165	+				+1.0
2,217,166	-				+0.9
2,217,166	-				+0.4
2,217,166	-				+0.7
2,217,235	+		PFLU_RS10050	0.20	-1.6
2,217,235	+		PFLU_RS10050	0.20	-0.0
2,217,235	+		PFLU_RS10050	0.20	-1.0
2,217,235	+		PFLU_RS10050	0.20	+2.1
2,217,235	+		PFLU_RS10050	0.20	-3.1
2,217,235	+		PFLU_RS10050	0.20	+0.2
2,217,235	+		PFLU_RS10050	0.20	+0.4
2,217,235	+		PFLU_RS10050	0.20	+1.3
2,217,235	+		PFLU_RS10050	0.20	+1.9
2,217,235	+		PFLU_RS10050	0.20	-1.3
2,217,235	+		PFLU_RS10050	0.20	-0.6
2,217,235	+		PFLU_RS10050	0.20	+1.0
2,217,235	+		PFLU_RS10050	0.20	-1.5
2,217,235	+		PFLU_RS10050	0.20	-1.9
2,217,235	+		PFLU_RS10050	0.20	+1.4
2,217,235	+		PFLU_RS10050	0.20	-0.4
2,217,235	+		PFLU_RS10050	0.20	-0.0
2,217,235	+		PFLU_RS10050	0.20	-0.5
2,217,235	+		PFLU_RS10050	0.20	-2.9
2,217,235	+		PFLU_RS10050	0.20	+1.4
2,217,235	+		PFLU_RS10050	0.20	+0.3
2,217,235	+		PFLU_RS10050	0.20	-2.0
2,217,235	+		PFLU_RS10050	0.20	+2.0
2,217,235	+		PFLU_RS10050	0.20	-2.8
2,217,236	-		PFLU_RS10050	0.21	-1.5
2,217,236	-		PFLU_RS10050	0.21	+1.1
2,217,236	-		PFLU_RS10050	0.21	-1.6
2,217,236	-		PFLU_RS10050	0.21	-0.5
2,217,236	-		PFLU_RS10050	0.21	-2.2
2,217,236	-		PFLU_RS10050	0.21	-1.5
2,217,236	-		PFLU_RS10050	0.21	+1.1
2,217,236	-		PFLU_RS10050	0.21	+1.3
2,217,236	-		PFLU_RS10050	0.21	-1.8
2,217,236	-		PFLU_RS10050	0.21	+2.0
2,217,236	-		PFLU_RS10050	0.21	+1.4
2,217,236	-		PFLU_RS10050	0.21	+0.5
2,217,236	-		PFLU_RS10050	0.21	+2.8
2,217,236	-		PFLU_RS10050	0.21	+3.1
2,217,236	-		PFLU_RS10050	0.21	-1.5
2,217,236	-		PFLU_RS10050	0.21	-1.3
2,217,236	-		PFLU_RS10050	0.21	-1.0
2,217,236	-		PFLU_RS10050	0.21	+0.2
2,217,236	-		PFLU_RS10050	0.21	+0.2
2,217,236	-		PFLU_RS10050	0.21	+2.1
2,217,438	-		PFLU_RS10050	0.82	+0.5
2,217,502	+				-2.2
2,217,502	+				-0.0
2,217,503	-				+0.6
2,217,503	-				+0.3
2,217,503	-				-0.5
2,217,503	-				+0.5
2,217,529	+				+0.5
2,217,530	-				+0.1
2,217,530	-				-1.9
2,217,723	+		PFLU_RS10055	0.43	+2.2
2,217,723	+		PFLU_RS10055	0.43	+0.5
2,217,723	+		PFLU_RS10055	0.43	-0.3
2,217,724	-		PFLU_RS10055	0.43	-2.2
2,217,724	-		PFLU_RS10055	0.43	+1.9
2,217,724	-		PFLU_RS10055	0.43	+1.5
2,217,724	-		PFLU_RS10055	0.43	+0.9
2,217,724	-		PFLU_RS10055	0.43	-2.3
2,217,918	+		PFLU_RS10055	0.79	+2.0
2,217,918	+		PFLU_RS10055	0.79	-1.6
2,217,918	+		PFLU_RS10055	0.79	-0.8
2,217,918	+		PFLU_RS10055	0.79	+3.3
2,217,918	+		PFLU_RS10055	0.79	+1.3
2,217,919	-		PFLU_RS10055	0.79	-1.6
2,217,919	-		PFLU_RS10055	0.79	+0.5
2,217,965	-		PFLU_RS10055	0.88	-3.3
2,217,965	-		PFLU_RS10055	0.88	+1.1
2,218,011	-				+0.5
2,218,177	+		PFLU_RS10060	0.12	+0.2
2,218,177	+		PFLU_RS10060	0.12	-1.8
2,218,177	+		PFLU_RS10060	0.12	-0.2
2,218,178	-		PFLU_RS10060	0.13	-3.5
2,218,315	-		PFLU_RS10060	0.24	-1.9
2,218,316	+		PFLU_RS10060	0.24	-1.9
2,218,316	+		PFLU_RS10060	0.24	+1.5
2,218,316	+		PFLU_RS10060	0.24	-3.0
2,218,316	+		PFLU_RS10060	0.24	-0.8
2,218,317	-		PFLU_RS10060	0.24	-0.0
2,218,317	-		PFLU_RS10060	0.24	-1.0
2,218,385	+		PFLU_RS10060	0.30	-2.5
2,218,385	+		PFLU_RS10060	0.30	+0.5
2,218,385	+		PFLU_RS10060	0.30	+1.7
2,218,386	-		PFLU_RS10060	0.30	-0.3
2,218,386	-		PFLU_RS10060	0.30	-1.5
2,218,386	-		PFLU_RS10060	0.30	-1.5
2,218,617	+		PFLU_RS10060	0.49	-0.6
2,218,727	+		PFLU_RS10060	0.58	+0.5
2,218,727	+		PFLU_RS10060	0.58	-1.5
2,218,727	+		PFLU_RS10060	0.58	-1.0
2,218,727	+		PFLU_RS10060	0.58	-0.8
2,218,727	+		PFLU_RS10060	0.58	-1.0
2,218,727	+		PFLU_RS10060	0.58	-2.8
2,218,727	+		PFLU_RS10060	0.58	-1.8
2,218,727	+		PFLU_RS10060	0.58	+1.7
2,218,727	+		PFLU_RS10060	0.58	-0.2
2,218,727	+		PFLU_RS10060	0.58	+0.0
2,218,727	+		PFLU_RS10060	0.58	-1.6
2,218,728	-		PFLU_RS10060	0.58	+1.0
2,218,728	-		PFLU_RS10060	0.58	+1.7
2,218,728	-		PFLU_RS10060	0.58	-0.8
2,218,728	-		PFLU_RS10060	0.58	-1.4
2,218,728	-		PFLU_RS10060	0.58	-0.7
2,218,728	-		PFLU_RS10060	0.58	-1.5
2,218,728	-		PFLU_RS10060	0.58	-2.2
2,218,728	-		PFLU_RS10060	0.58	+3.1
2,218,728	-		PFLU_RS10060	0.58	+0.3
2,218,728	-		PFLU_RS10060	0.58	-1.9
2,218,787	+		PFLU_RS10060	0.63	-0.1
2,218,787	+		PFLU_RS10060	0.63	-0.8
2,218,788	-		PFLU_RS10060	0.63	+1.1
2,218,788	-		PFLU_RS10060	0.63	-1.0
2,218,800	+		PFLU_RS10060	0.64	-0.8
2,218,800	+		PFLU_RS10060	0.64	-1.3
2,218,800	+		PFLU_RS10060	0.64	-0.2
2,218,800	+		PFLU_RS10060	0.64	+0.7
2,218,800	+		PFLU_RS10060	0.64	-0.1
2,218,800	+		PFLU_RS10060	0.64	-0.5
2,218,800	+		PFLU_RS10060	0.64	-0.0
2,218,801	-		PFLU_RS10060	0.64	-0.8
2,218,801	-		PFLU_RS10060	0.64	-0.6
2,218,801	-		PFLU_RS10060	0.64	+0.3
2,218,801	-		PFLU_RS10060	0.64	-1.7
2,218,801	-		PFLU_RS10060	0.64	+0.1
2,218,801	-		PFLU_RS10060	0.64	-1.6
2,218,801	-		PFLU_RS10060	0.64	-0.0
2,218,801	-		PFLU_RS10060	0.64	-0.0
2,218,801	-		PFLU_RS10060	0.64	+1.8
2,218,801	-		PFLU_RS10060	0.64	-0.6
2,218,802	+		PFLU_RS10060	0.64	+0.3
2,218,802	+		PFLU_RS10060	0.64	-1.3
2,218,802	+		PFLU_RS10060	0.64	-1.9
2,218,803	-		PFLU_RS10060	0.65	-2.3
2,218,898	+		PFLU_RS10060	0.72	-1.5
2,218,898	+		PFLU_RS10060	0.72	+2.4
2,218,910	+		PFLU_RS10060	0.73	+2.2
2,218,910	+		PFLU_RS10060	0.73	+2.3
2,218,911	-		PFLU_RS10060	0.73	+0.3