Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07525

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
1,670,774	+		PFLU_RS07515	0.17	-1.6
1,670,802	+		PFLU_RS07515	0.21	+1.2
1,670,803	-		PFLU_RS07515	0.22	-0.4
1,670,855	-		PFLU_RS07515	0.29	-0.0
1,671,066	+		PFLU_RS07515	0.60	-1.4
1,671,066	+		PFLU_RS07515	0.60	-0.3
1,671,067	-		PFLU_RS07515	0.60	-2.3
1,671,067	-		PFLU_RS07515	0.60	+2.1
1,671,067	-		PFLU_RS07515	0.60	-1.3
1,671,067	-		PFLU_RS07515	0.60	-1.3
1,671,067	-		PFLU_RS07515	0.60	-1.3
1,671,084	+		PFLU_RS07515	0.62	+0.2
1,671,084	+		PFLU_RS07515	0.62	+0.3
1,671,084	+		PFLU_RS07515	0.62	-0.1
1,671,084	+		PFLU_RS07515	0.62	-0.3
1,671,084	+		PFLU_RS07515	0.62	+0.7
1,671,085	-		PFLU_RS07515	0.63	-2.0
1,671,085	-		PFLU_RS07515	0.63	+0.7
1,671,085	-		PFLU_RS07515	0.63	+0.9
1,671,110	+		PFLU_RS07515	0.66	-1.3
1,671,110	+		PFLU_RS07515	0.66	-0.6
1,671,111	-		PFLU_RS07515	0.66	+0.3
1,671,111	-		PFLU_RS07515	0.66	+1.2
1,671,271	+		PFLU_RS07515	0.90	+2.3
1,671,272	-		PFLU_RS07515	0.90	-0.6
1,671,272	-		PFLU_RS07515	0.90	+1.7
1,671,382	+				+1.2
1,671,382	+				+1.4
1,671,388	+				-1.2
1,671,388	+				-1.2
1,671,388	+				-0.4
1,671,388	+				+1.8
1,671,388	+				-1.8
1,671,388	+				-2.2
1,671,388	+				-0.1
1,671,388	+				-2.4
1,671,388	+				+1.6
1,671,389	-				-2.6
1,671,389	-				+1.0
1,671,389	-				-1.9
1,671,389	-				+2.5
1,671,389	-				-2.2
1,671,436	+				-2.3
1,671,436	+				-3.1
1,671,437	-				-1.9
1,671,437	-				-1.4
1,671,437	-				-0.2
1,671,437	-				+0.2
1,671,555	+		PFLU_RS07520	0.48	+1.8
1,671,697	-				-0.3
1,671,713	+				-1.9
1,671,713	+				-2.4
1,671,713	+				-0.2
1,671,713	+				-2.3
1,671,713	+				-1.1
1,671,713	+				+0.3
1,671,714	-				+0.9
1,672,057	+		PFLU_RS07525	0.76	-2.0
1,672,065	+		PFLU_RS07525	0.78	+1.5
1,672,066	-		PFLU_RS07525	0.78	-1.6
1,672,066	-		PFLU_RS07525	0.78	+2.6
1,672,150	+				-0.6
1,672,150	+				-0.6
1,672,150	+				-0.6
1,672,150	+				+0.3
1,672,150	+				-2.6
1,672,150	+				+1.5
1,672,150	+				-0.8
1,672,150	+				+2.5
1,672,150	+				-1.1
1,672,150	+				+0.5
1,672,150	+				+0.7
1,672,150	+				+2.4
1,672,150	+				+1.3
1,672,150	+				-3.1
1,672,150	+				-2.0
1,672,150	+				+2.7
1,672,150	+				-1.1
1,672,150	+				-0.8
1,672,150	+				+0.9
1,672,150	+				+0.2
1,672,150	+				-1.4
1,672,150	+				+0.5
1,672,150	+				-2.8
1,672,150	+				-2.6
1,672,150	+				-2.1
1,672,150	+				+1.0
1,672,150	+				+2.0
1,672,150	+				+2.7
1,672,150	+				+2.2
1,672,150	+				+0.2
1,672,150	+				-3.0
1,672,150	+				-1.5
1,672,150	+				+0.7
1,672,150	+				+3.4
1,672,150	+				+0.2
1,672,150	+				-2.3
1,672,150	+				+0.6
1,672,150	+				+0.2
1,672,150	+				-0.3
1,672,150	+				-2.8
1,672,150	+				+0.3
1,672,150	+				-0.8
1,672,150	+				-3.0
1,672,150	+				+1.4
1,672,150	+				-1.3
1,672,150	+				-0.6
1,672,150	+				+1.9
1,672,150	+				+0.2
1,672,150	+				+0.7
1,672,150	+				+0.7
1,672,150	+				+0.7
1,672,150	+				-0.1
1,672,150	+				+1.8
1,672,150	+				-0.6
1,672,150	+				-1.4
1,672,151	-				+1.0
1,672,151	-				-0.8
1,672,151	-				+1.2
1,672,151	-				+1.5
1,672,151	-				+0.6
1,672,151	-				+1.0
1,672,151	-				+0.7
1,672,151	-				+0.6
1,672,151	-				+0.2
1,672,151	-				-1.8
1,672,151	-				+2.0
1,672,151	-				-2.6
1,672,151	-				-1.1
1,672,151	-				+1.3
1,672,151	-				+1.4
1,672,151	-				-1.1
1,672,151	-				+0.4
1,672,151	-				+2.2
1,672,151	-				+0.2
1,672,151	-				-1.4
1,672,151	-				+2.6
1,672,151	-				+1.3
1,672,151	-				+1.5
1,672,151	-				+0.4
1,672,151	-				+1.6
1,672,151	-				+1.4
1,672,151	-				+0.5
1,672,151	-				+0.0
1,672,151	-				-0.3
1,672,151	-				+2.2
1,672,151	-				+1.5
1,672,151	-				+2.3
1,672,151	-				-2.6
1,672,151	-				+0.7
1,672,151	-				+2.0
1,672,151	-				-2.3
1,672,151	-				+3.1
1,672,151	-				+0.2
1,672,151	-				-2.6
1,672,151	-				+1.7
1,672,151	-				+0.2
1,672,151	-				+1.4
1,672,151	-				+2.2
1,672,151	-				-0.2
1,672,151	-				+0.5
1,672,151	-				+2.2
1,672,151	-				-2.0
1,672,151	-				-1.8
1,672,151	-				+0.1
1,672,151	-				-2.0
1,672,196	+				+0.7
1,672,196	+				+0.1
1,672,196	+				-1.7
1,672,196	+				-1.3
1,672,196	+				-1.8
1,672,196	+				+0.7
1,672,196	+				+1.9
1,672,196	+				+0.4
1,672,196	+				+1.6
1,672,196	+				+1.2
1,672,196	+				+1.0
1,672,196	+				+0.2
1,672,196	+				-1.3
1,672,196	+				-1.8
1,672,196	+				-1.7
1,672,196	+				+1.2
1,672,196	+				-1.4
1,672,196	+				-0.8
1,672,196	+				+1.1
1,672,197	-				-0.5
1,672,197	-				+0.7
1,672,197	-				+1.3
1,672,197	-				-2.7
1,672,197	-				-0.8
1,672,197	-				-0.8
1,672,197	-				-0.3
1,672,197	-				-1.3
1,672,197	-				+1.7
1,672,197	-				-2.0
1,672,197	-				+0.7
1,672,231	+				+2.0
1,672,232	-				+0.4
1,672,240	+				+0.2
1,672,240	+				+2.1
1,672,241	-				-0.1
1,672,274	-				+1.7
1,672,284	+				+2.1
1,672,284	+				-0.2
1,672,284	+				-1.8
1,672,284	+				+1.3
1,672,285	-				-0.8
1,672,293	+				+0.5
1,672,293	+				-2.0
1,672,293	+				+0.7
1,672,293	+				+1.3
1,672,294	-				-1.4
1,672,294	-				-1.3
1,672,304	-				-1.8
1,672,414	+				-1.8
1,672,414	+				-1.7
1,672,415	-				+0.4
1,672,486	+		PFLU_RS07530	0.12	+0.9
1,672,513	+		PFLU_RS07530	0.13	+1.6
1,672,513	+		PFLU_RS07530	0.13	+2.0
1,672,513	+		PFLU_RS07530	0.13	+1.4
1,672,513	+		PFLU_RS07530	0.13	-2.4
1,672,513	+		PFLU_RS07530	0.13	-0.5
1,672,513	+		PFLU_RS07530	0.13	-1.7
1,672,513	+		PFLU_RS07530	0.13	+2.3
1,672,513	+		PFLU_RS07530	0.13	-1.1
1,672,513	+		PFLU_RS07530	0.13	-2.6
1,672,513	+		PFLU_RS07530	0.13	+1.4
1,672,513	+		PFLU_RS07530	0.13	+0.6
1,672,513	+		PFLU_RS07530	0.13	+1.6
1,672,513	+		PFLU_RS07530	0.13	+2.7
1,672,513	+		PFLU_RS07530	0.13	-1.1
1,672,513	+		PFLU_RS07530	0.13	+0.1
1,672,513	+		PFLU_RS07530	0.13	+1.2
1,672,513	+		PFLU_RS07530	0.13	-2.6
1,672,513	+		PFLU_RS07530	0.13	-0.8
1,672,513	+		PFLU_RS07530	0.13	-1.8
1,672,513	+		PFLU_RS07530	0.13	-2.7
1,672,513	+		PFLU_RS07530	0.13	-2.0
1,672,513	+		PFLU_RS07530	0.13	+2.3
1,672,513	+		PFLU_RS07530	0.13	-1.1
1,672,513	+		PFLU_RS07530	0.13	-0.4
1,672,513	+		PFLU_RS07530	0.13	-0.8
1,672,513	+		PFLU_RS07530	0.13	+0.7
1,672,513	+		PFLU_RS07530	0.13	+2.1
1,672,513	+		PFLU_RS07530	0.13	+1.7
1,672,513	+		PFLU_RS07530	0.13	-2.7
1,672,513	+		PFLU_RS07530	0.13	-2.0
1,672,513	+		PFLU_RS07530	0.13	-1.5
1,672,513	+		PFLU_RS07530	0.13	-1.6
1,672,513	+		PFLU_RS07530	0.13	-2.3
1,672,513	+		PFLU_RS07530	0.13	-1.1
1,672,513	+		PFLU_RS07530	0.13	-0.1
1,672,513	+		PFLU_RS07530	0.13	+2.0
1,672,513	+		PFLU_RS07530	0.13	+0.8
1,672,513	+		PFLU_RS07530	0.13	+0.4
1,672,514	-		PFLU_RS07530	0.13	-1.1
1,672,514	-		PFLU_RS07530	0.13	+1.7
1,672,514	-		PFLU_RS07530	0.13	-1.7
1,672,514	-		PFLU_RS07530	0.13	-0.5
1,672,514	-		PFLU_RS07530	0.13	+0.4
1,672,514	-		PFLU_RS07530	0.13	-0.8
1,672,514	-		PFLU_RS07530	0.13	+0.6
1,672,514	-		PFLU_RS07530	0.13	+1.4
1,672,514	-		PFLU_RS07530	0.13	+0.7
1,672,514	-		PFLU_RS07530	0.13	+0.4
1,672,514	-		PFLU_RS07530	0.13	-2.2
1,672,514	-		PFLU_RS07530	0.13	+3.2
1,672,514	-		PFLU_RS07530	0.13	-2.6
1,672,514	-		PFLU_RS07530	0.13	-1.1
1,672,514	-		PFLU_RS07530	0.13	-1.1
1,672,514	-		PFLU_RS07530	0.13	+1.6
1,672,514	-		PFLU_RS07530	0.13	+0.7
1,672,514	-		PFLU_RS07530	0.13	-2.2
1,672,514	-		PFLU_RS07530	0.13	-1.8
1,672,514	-		PFLU_RS07530	0.13	-1.1
1,672,514	-		PFLU_RS07530	0.13	-1.8
1,672,514	-		PFLU_RS07530	0.13	-1.8
1,672,514	-		PFLU_RS07530	0.13	+0.8
1,672,514	-		PFLU_RS07530	0.13	-1.3
1,672,514	-		PFLU_RS07530	0.13	-3.0
1,672,514	-		PFLU_RS07530	0.13	-0.6
1,672,514	-		PFLU_RS07530	0.13	+2.1
1,672,514	-		PFLU_RS07530	0.13	+0.2
1,672,514	-		PFLU_RS07530	0.13	-1.6
1,672,514	-		PFLU_RS07530	0.13	+1.5
1,672,514	-		PFLU_RS07530	0.13	-0.8
1,672,514	-		PFLU_RS07530	0.13	+0.2
1,672,514	-		PFLU_RS07530	0.13	+2.3
1,672,514	-		PFLU_RS07530	0.13	-0.3
1,672,514	-		PFLU_RS07530	0.13	-1.4
1,672,514	-		PFLU_RS07530	0.13	-1.3
1,672,514	-		PFLU_RS07530	0.13	-0.3
1,672,514	-		PFLU_RS07530	0.13	-1.6
1,672,514	-		PFLU_RS07530	0.13	-0.5
1,672,514	-		PFLU_RS07530	0.13	+1.3
1,672,514	-		PFLU_RS07530	0.13	+0.1
1,672,514	-		PFLU_RS07530	0.13	+2.5
1,672,514	-		PFLU_RS07530	0.13	-2.3
1,672,514	-		PFLU_RS07530	0.13	+0.2
1,672,514	-		PFLU_RS07530	0.13	+0.4
1,672,514	-		PFLU_RS07530	0.13	+0.5
1,672,514	-		PFLU_RS07530	0.13	-2.5
1,672,514	-		PFLU_RS07530	0.13	-2.1
1,672,549	+		PFLU_RS07530	0.15	-0.3
1,672,550	-		PFLU_RS07530	0.15	+1.6
1,672,656	+		PFLU_RS07530	0.20	+2.2
1,672,754	+		PFLU_RS07530	0.25	+0.5
1,672,915	+		PFLU_RS07530	0.33	-2.8
1,672,915	+		PFLU_RS07530	0.33	-0.6
1,672,930	+		PFLU_RS07530	0.34	+0.6
1,672,930	+		PFLU_RS07530	0.34	-1.3
1,672,931	-		PFLU_RS07530	0.34	+1.4
1,672,931	-		PFLU_RS07530	0.34	+1.4
1,672,931	-		PFLU_RS07530	0.34	+0.8
1,672,936	+		PFLU_RS07530	0.34	-1.8
1,672,936	+		PFLU_RS07530	0.34	-1.6
1,672,936	+		PFLU_RS07530	0.34	+0.0
1,672,936	+		PFLU_RS07530	0.34	+0.2
1,672,936	+		PFLU_RS07530	0.34	+1.7
1,672,936	+		PFLU_RS07530	0.34	+1.7
1,672,936	+		PFLU_RS07530	0.34	+1.3
1,672,936	+		PFLU_RS07530	0.34	-0.8
1,672,937	-		PFLU_RS07530	0.34	-0.6
1,672,937	-		PFLU_RS07530	0.34	+2.2
1,672,937	-		PFLU_RS07530	0.34	-1.6
1,672,937	-		PFLU_RS07530	0.34	-0.5
1,672,937	-		PFLU_RS07530	0.34	+0.7
1,672,937	-		PFLU_RS07530	0.34	-2.2
1,673,035	+		PFLU_RS07530	0.39	-0.6
1,673,035	+		PFLU_RS07530	0.39	-0.7
1,673,035	+		PFLU_RS07530	0.39	+1.7
1,673,035	+		PFLU_RS07530	0.39	+0.0
1,673,035	+		PFLU_RS07530	0.39	+0.7
1,673,035	+		PFLU_RS07530	0.39	-0.6
1,673,035	+		PFLU_RS07530	0.39	-1.5
1,673,035	+		PFLU_RS07530	0.39	+0.7
1,673,035	+		PFLU_RS07530	0.39	+0.9
1,673,035	+		PFLU_RS07530	0.39	+0.5
1,673,035	+		PFLU_RS07530	0.39	-0.1
1,673,036	-		PFLU_RS07530	0.39	+0.7
1,673,036	-		PFLU_RS07530	0.39	+2.4
1,673,036	-		PFLU_RS07530	0.39	+2.9
1,673,036	-		PFLU_RS07530	0.39	+1.0
1,673,036	-		PFLU_RS07530	0.39	-0.3
1,673,036	-		PFLU_RS07530	0.39	+0.1
1,673,036	-		PFLU_RS07530	0.39	+1.6
1,673,036	-		PFLU_RS07530	0.39	-1.1
1,673,036	-		PFLU_RS07530	0.39	-2.3
1,673,036	-		PFLU_RS07530	0.39	+0.0
1,673,036	-		PFLU_RS07530	0.39	-0.3
1,673,036	-		PFLU_RS07530	0.39	+1.1
1,673,036	-		PFLU_RS07530	0.39	+0.4
1,673,062	-		PFLU_RS07530	0.40	+1.2