Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07320

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
1,628,759	+		PFLU_RS07315	0.47	-0.6
1,628,759	+		PFLU_RS07315	0.47	-1.0
1,628,760	-		PFLU_RS07315	0.47	-0.1
1,628,760	-		PFLU_RS07315	0.47	+1.8
1,628,760	-		PFLU_RS07315	0.47	-1.8
1,628,925	+		PFLU_RS07315	0.60	-1.7
1,629,054	+		PFLU_RS07315	0.71	+1.0
1,629,054	+		PFLU_RS07315	0.71	-1.9
1,629,055	-		PFLU_RS07315	0.71	+0.2
1,629,055	-		PFLU_RS07315	0.71	-0.9
1,629,055	-		PFLU_RS07315	0.71	-2.2
1,629,055	-		PFLU_RS07315	0.71	-1.4
1,629,055	-		PFLU_RS07315	0.71	+1.4
1,629,055	-		PFLU_RS07315	0.71	+0.2
1,629,055	-		PFLU_RS07315	0.71	-0.0
1,629,146	-		PFLU_RS07315	0.78	+1.8
1,629,146	-		PFLU_RS07315	0.78	+0.4
1,629,146	-		PFLU_RS07315	0.78	-2.3
1,629,413	+				-1.4
1,629,413	+				-0.2
1,629,413	+				-0.3
1,629,413	+				+0.4
1,629,413	+				-0.1
1,629,413	+				-0.2
1,629,413	+				-2.6
1,629,413	+				-2.1
1,629,413	+				+3.6
1,629,413	+				+0.2
1,629,414	-				-2.7
1,629,414	-				-1.0
1,629,414	-				-1.4
1,629,414	-				+0.6
1,629,467	+				-1.6
1,629,479	+				+0.6
1,629,479	+				+2.4
1,629,479	+				+1.8
1,629,480	-				+1.3
1,629,480	-				-1.4
1,629,480	-				-1.4
1,629,480	-				-1.4
1,629,481	+				-2.9
1,629,481	+				-0.4
1,629,481	+				+0.9
1,629,481	+				-0.9
1,629,481	+				-3.2
1,629,481	+				-1.6
1,629,481	+				-0.2
1,629,481	+				+1.8
1,629,481	+				+2.6
1,629,481	+				+0.6
1,629,481	+				+0.3
1,629,481	+				+0.2
1,629,481	+				-0.8
1,629,481	+				-1.0
1,629,482	-				+0.8
1,629,482	-				+0.8
1,629,482	-				-1.7
1,629,482	-				+2.1
1,629,482	-				+1.8
1,629,482	-				+1.8
1,629,482	-				-0.6
1,629,482	-				-1.6
1,629,482	-				-1.0
1,629,482	-				+1.4
1,629,482	-				+0.2
1,629,521	+				+1.1
1,629,524	+				+1.0
1,629,524	+				-2.2
1,629,524	+				-1.2
1,629,524	+				-2.3
1,629,524	+				-1.0
1,629,525	-				+0.2
1,629,525	-				+1.2
1,629,525	-				+1.9
1,629,525	-				-2.6
1,629,525	-				+1.9
1,629,553	+				+1.2
1,629,553	+				+1.9
1,629,553	+				+0.4
1,629,553	+				-0.7
1,629,563	+				+1.8
1,629,563	+				+1.8
1,629,563	+				-1.8
1,629,563	+				-1.0
1,629,563	+				-2.2
1,629,563	+				+0.8
1,629,563	+				-1.7
1,629,563	+				-3.0
1,629,563	+				+0.3
1,629,563	+				+1.8
1,629,564	-				+1.2
1,629,564	-				+1.8
1,629,564	-				+0.8
1,629,564	-				-0.8
1,629,564	-				-2.2
1,629,564	-				-2.2
1,629,564	-				+1.4
1,629,564	-				+0.0
1,629,564	-				-1.7
1,629,564	-				-0.8
1,629,564	-				+0.7
1,629,564	-				-2.6
1,629,564	-				-0.8
1,629,564	-				+1.4
1,629,564	-				-1.2
1,629,564	-				-2.0
1,629,564	-				-2.0
1,629,564	-				+1.3
1,629,575	-				-0.6
1,629,575	-				-3.1
1,629,575	-				-0.3
1,629,607	+				+0.8
1,629,607	+				+0.3
1,629,607	+				+0.0
1,629,607	+				-0.9
1,629,608	-				-0.2
1,629,608	-				-0.7
1,629,608	-				+0.5
1,629,608	-				+1.2
1,629,608	-				-0.6
1,629,608	-				-1.4
1,629,608	-				-0.5
1,629,643	+				-1.4
1,629,643	+				+2.3
1,629,643	+				-0.5
1,629,643	+				+1.4
1,629,643	+				+2.4
1,629,643	+				-1.2
1,629,643	+				-1.8
1,629,644	-				+1.8
1,629,644	-				-0.9
1,629,644	-				+0.4
1,629,644	-				+1.7
1,629,708	+				+0.2
1,629,708	+				-0.7
1,629,708	+				-1.6
1,629,708	+				+0.6
1,629,709	-				+0.8
1,629,883	+		PFLU_RS07320	0.73	+2.6
1,629,883	+		PFLU_RS07320	0.73	+1.8
1,629,883	+		PFLU_RS07320	0.73	-1.8
1,629,883	+		PFLU_RS07320	0.73	+1.1
1,629,884	-		PFLU_RS07320	0.73	-1.8
1,629,884	-		PFLU_RS07320	0.73	+1.3
1,629,884	-		PFLU_RS07320	0.73	-1.7
1,629,884	-		PFLU_RS07320	0.73	+1.3
1,629,968	-				-3.5
1,630,007	+				+0.9
1,630,007	+				+0.4
1,630,007	+				-2.1
1,630,007	+				-1.6
1,630,008	-				+1.4
1,630,008	-				-2.7
1,630,008	-				+0.5
1,630,014	-				-0.4
1,630,014	-				-0.2
1,630,014	-				-1.6
1,630,046	+				-2.4
1,630,046	+				+0.4
1,630,047	-				+0.8
1,630,103	+				+0.6
1,630,104	-				-1.4
1,630,105	+				-3.9
1,630,105	+				-0.6
1,630,105	+				-2.2
1,630,105	+				-0.2
1,630,105	+				+0.4
1,630,106	-				-1.0
1,630,216	-				-2.8
1,630,216	-				-1.6
1,630,340	-		PFLU_RS07325	0.12	-2.5
1,630,484	+		PFLU_RS07325	0.21	-1.9
1,630,484	+		PFLU_RS07325	0.21	+0.6
1,630,484	+		PFLU_RS07325	0.21	+1.8
1,630,484	+		PFLU_RS07325	0.21	-1.7
1,630,485	-		PFLU_RS07325	0.21	+0.2
1,630,485	-		PFLU_RS07325	0.21	+0.9
1,630,485	-		PFLU_RS07325	0.21	-0.3
1,630,514	+		PFLU_RS07325	0.23	-2.8
1,630,514	+		PFLU_RS07325	0.23	+1.2
1,630,515	-		PFLU_RS07325	0.23	+1.1
1,630,515	-		PFLU_RS07325	0.23	-1.8
1,630,515	-		PFLU_RS07325	0.23	-0.3
1,630,573	+		PFLU_RS07325	0.27	+2.2
1,630,574	-		PFLU_RS07325	0.27	+2.0
1,630,574	-		PFLU_RS07325	0.27	-0.5
1,630,646	+		PFLU_RS07325	0.31	+0.5
1,630,646	+		PFLU_RS07325	0.31	+1.7
1,630,646	+		PFLU_RS07325	0.31	+1.1
1,630,646	+		PFLU_RS07325	0.31	+1.4
1,630,646	+		PFLU_RS07325	0.31	-2.1
1,630,647	-		PFLU_RS07325	0.31	-1.8
1,630,647	-		PFLU_RS07325	0.31	-2.6
1,630,647	-		PFLU_RS07325	0.31	-2.8
1,630,649	+		PFLU_RS07325	0.31	-1.6
1,630,649	+		PFLU_RS07325	0.31	-0.9
1,630,649	+		PFLU_RS07325	0.31	-1.1
1,630,649	+		PFLU_RS07325	0.31	+2.9
1,630,649	+		PFLU_RS07325	0.31	-0.6
1,630,649	+		PFLU_RS07325	0.31	+0.9
1,630,649	+		PFLU_RS07325	0.31	-1.0
1,630,649	+		PFLU_RS07325	0.31	-2.8
1,630,649	+		PFLU_RS07325	0.31	+1.1
1,630,649	+		PFLU_RS07325	0.31	+2.8
1,630,649	+		PFLU_RS07325	0.31	+0.1
1,630,649	+		PFLU_RS07325	0.31	+1.0
1,630,649	+		PFLU_RS07325	0.31	+0.5
1,630,649	+		PFLU_RS07325	0.31	+0.6
1,630,650	-		PFLU_RS07325	0.31	+0.6
1,630,650	-		PFLU_RS07325	0.31	-2.3
1,630,650	-		PFLU_RS07325	0.31	-1.1
1,630,650	-		PFLU_RS07325	0.31	-0.2
1,630,694	+		PFLU_RS07325	0.34	-0.2
1,630,694	+		PFLU_RS07325	0.34	+1.3
1,630,695	-		PFLU_RS07325	0.34	-0.3
1,630,695	-		PFLU_RS07325	0.34	+0.8
1,630,695	-		PFLU_RS07325	0.34	+0.9
1,630,695	-		PFLU_RS07325	0.34	+0.4
1,630,695	-		PFLU_RS07325	0.34	-2.3
1,630,747	+		PFLU_RS07325	0.37	-0.6
1,630,747	+		PFLU_RS07325	0.37	+1.2
1,630,748	-		PFLU_RS07325	0.37	-3.1
1,630,748	-		PFLU_RS07325	0.37	-1.1
1,630,851	+		PFLU_RS07325	0.44	+3.0
1,630,851	+		PFLU_RS07325	0.44	+2.2
1,630,851	+		PFLU_RS07325	0.44	+0.9
1,630,852	-		PFLU_RS07325	0.44	-1.4
1,630,875	+		PFLU_RS07325	0.45	-2.2
1,630,875	+		PFLU_RS07325	0.45	-1.1
1,630,875	+		PFLU_RS07325	0.45	+0.6
1,630,875	+		PFLU_RS07325	0.45	+1.3
1,630,876	-		PFLU_RS07325	0.45	-2.6