Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS05290

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
1,177,915	+		PFLU_RS05280	0.82	-1.1
1,177,915	+		PFLU_RS05280	0.82	+0.9
1,177,915	+		PFLU_RS05280	0.82	-1.6
1,177,915	+		PFLU_RS05280	0.82	-1.5
1,177,916	-		PFLU_RS05280	0.82	+0.4
1,177,916	-		PFLU_RS05280	0.82	-2.0
1,177,916	-		PFLU_RS05280	0.82	-0.1
1,177,916	-		PFLU_RS05280	0.82	+2.1
1,177,916	-		PFLU_RS05280	0.82	-1.8
1,177,916	-		PFLU_RS05280	0.82	+1.5
1,177,946	-		PFLU_RS05280	0.84	+1.3
1,178,018	-		PFLU_RS05280	0.90	-0.9
1,178,032	+				+3.0
1,178,032	+				-2.2
1,178,032	+				-0.3
1,178,032	+				+2.6
1,178,032	+				-2.5
1,178,032	+				-1.6
1,178,032	+				+0.9
1,178,032	+				-0.1
1,178,032	+				-0.2
1,178,033	-				+1.9
1,178,033	-				-2.8
1,178,033	-				-1.3
1,178,033	-				-2.8
1,178,033	-				+1.6
1,178,033	-				-1.6
1,178,033	-				+0.1
1,178,033	-				-1.6
1,178,667	+				+1.0
1,178,667	+				-1.7
1,178,667	+				+1.5
1,178,667	+				+0.1
1,178,667	+				-0.3
1,178,668	-				-2.6
1,178,668	-				+2.2
1,178,668	-				-0.9
1,178,668	-				-0.7
1,178,668	-				+0.3
1,178,668	-				+0.5
1,178,668	-				-0.5
1,178,669	+				+1.4
1,178,678	+				+1.4
1,178,678	+				-0.5
1,178,678	+				+0.6
1,178,678	+				-1.8
1,178,679	-				-1.9
1,178,679	-				+1.7
1,178,679	-				+0.3
1,178,679	-				+4.0
1,178,679	-				+1.7
1,178,679	-				+3.5
1,178,718	-				+0.9
1,178,718	-				+0.6
1,178,739	+				-0.1
1,178,740	-				-0.5
1,178,826	-				-0.1
1,178,835	+		PFLU_RS05290	0.10	-2.2
1,178,835	+		PFLU_RS05290	0.10	+1.9
1,178,835	+		PFLU_RS05290	0.10	+5.0
1,178,835	+		PFLU_RS05290	0.10	-1.9
1,178,835	+		PFLU_RS05290	0.10	+2.6
1,178,835	+		PFLU_RS05290	0.10	-1.6
1,178,835	+		PFLU_RS05290	0.10	+2.1
1,178,835	+		PFLU_RS05290	0.10	-1.5
1,178,836	-		PFLU_RS05290	0.10	+1.2
1,178,836	-		PFLU_RS05290	0.10	+1.1
1,178,836	-		PFLU_RS05290	0.10	-1.1
1,178,836	-		PFLU_RS05290	0.10	+1.6
1,178,836	-		PFLU_RS05290	0.10	-0.4
1,178,836	-		PFLU_RS05290	0.10	-0.9
1,178,836	-		PFLU_RS05290	0.10	-2.3
1,178,836	-		PFLU_RS05290	0.10	-0.7
1,178,922	-		PFLU_RS05290	0.19	-1.8
1,178,965	+		PFLU_RS05290	0.24	+1.2
1,178,965	+		PFLU_RS05290	0.24	-0.2
1,178,980	-		PFLU_RS05290	0.25	-0.6
1,179,041	+		PFLU_RS05290	0.32	-1.1
1,179,041	+		PFLU_RS05290	0.32	+1.4
1,179,041	+		PFLU_RS05290	0.32	+0.3
1,179,041	+		PFLU_RS05290	0.32	-0.2
1,179,042	-		PFLU_RS05290	0.32	+0.8
1,179,042	-		PFLU_RS05290	0.32	-1.5
1,179,042	-		PFLU_RS05290	0.32	+1.4
1,179,042	-		PFLU_RS05290	0.32	+0.1
1,179,042	-		PFLU_RS05290	0.32	-2.2
1,179,042	-		PFLU_RS05290	0.32	-0.7
1,179,128	+		PFLU_RS05290	0.41	+0.3
1,179,129	-		PFLU_RS05290	0.41	+0.6
1,179,300	+		PFLU_RS05290	0.59	-1.1
1,179,300	+		PFLU_RS05290	0.59	+0.5
1,179,300	+		PFLU_RS05290	0.59	+1.1
1,179,300	+		PFLU_RS05290	0.59	+2.4
1,179,300	+		PFLU_RS05290	0.59	-0.6
1,179,300	+		PFLU_RS05290	0.59	+1.4
1,179,300	+		PFLU_RS05290	0.59	-0.5
1,179,300	+		PFLU_RS05290	0.59	-0.2
1,179,300	+		PFLU_RS05290	0.59	-2.2
1,179,300	+		PFLU_RS05290	0.59	-0.6
1,179,300	+		PFLU_RS05290	0.59	+1.1
1,179,300	+		PFLU_RS05290	0.59	-1.5
1,179,300	+		PFLU_RS05290	0.59	+3.4
1,179,300	+		PFLU_RS05290	0.59	-0.8
1,179,300	+		PFLU_RS05290	0.59	+1.5
1,179,300	+		PFLU_RS05290	0.59	+1.4
1,179,300	+		PFLU_RS05290	0.59	+1.1
1,179,300	+		PFLU_RS05290	0.59	+0.0
1,179,300	+		PFLU_RS05290	0.59	+0.3
1,179,300	+		PFLU_RS05290	0.59	-0.4
1,179,300	+		PFLU_RS05290	0.59	+2.6
1,179,300	+		PFLU_RS05290	0.59	-0.1
1,179,300	+		PFLU_RS05290	0.59	-1.1
1,179,300	+		PFLU_RS05290	0.59	+0.9
1,179,300	+		PFLU_RS05290	0.59	+0.9
1,179,300	+		PFLU_RS05290	0.59	-0.7
1,179,300	+		PFLU_RS05290	0.59	-0.5
1,179,300	+		PFLU_RS05290	0.59	-0.3
1,179,300	+		PFLU_RS05290	0.59	-2.5
1,179,300	+		PFLU_RS05290	0.59	+1.1
1,179,300	+		PFLU_RS05290	0.59	-0.5
1,179,300	+		PFLU_RS05290	0.59	+0.9
1,179,300	+		PFLU_RS05290	0.59	+4.0
1,179,300	+		PFLU_RS05290	0.59	+2.5
1,179,300	+		PFLU_RS05290	0.59	+2.1
1,179,300	+		PFLU_RS05290	0.59	+1.4
1,179,300	+		PFLU_RS05290	0.59	-2.1
1,179,300	+		PFLU_RS05290	0.59	-2.3
1,179,300	+		PFLU_RS05290	0.59	+1.4
1,179,300	+		PFLU_RS05290	0.59	-0.5
1,179,300	+		PFLU_RS05290	0.59	-1.8
1,179,300	+		PFLU_RS05290	0.59	-3.8
1,179,300	+		PFLU_RS05290	0.59	-2.5
1,179,301	-		PFLU_RS05290	0.59	+1.4
1,179,301	-		PFLU_RS05290	0.59	-1.8
1,179,301	-		PFLU_RS05290	0.59	+1.2
1,179,301	-		PFLU_RS05290	0.59	+1.9
1,179,301	-		PFLU_RS05290	0.59	-0.7
1,179,301	-		PFLU_RS05290	0.59	-2.1
1,179,301	-		PFLU_RS05290	0.59	-1.3
1,179,301	-		PFLU_RS05290	0.59	+0.1
1,179,301	-		PFLU_RS05290	0.59	-1.1
1,179,301	-		PFLU_RS05290	0.59	+1.1
1,179,301	-		PFLU_RS05290	0.59	+0.3
1,179,301	-		PFLU_RS05290	0.59	-1.6
1,179,301	-		PFLU_RS05290	0.59	-1.8
1,179,301	-		PFLU_RS05290	0.59	+0.9
1,179,301	-		PFLU_RS05290	0.59	+2.4
1,179,301	-		PFLU_RS05290	0.59	-1.5
1,179,301	-		PFLU_RS05290	0.59	-0.7
1,179,301	-		PFLU_RS05290	0.59	+0.8
1,179,301	-		PFLU_RS05290	0.59	-1.1
1,179,301	-		PFLU_RS05290	0.59	-1.7
1,179,301	-		PFLU_RS05290	0.59	-2.1
1,179,301	-		PFLU_RS05290	0.59	-2.2
1,179,301	-		PFLU_RS05290	0.59	-0.7
1,179,301	-		PFLU_RS05290	0.59	-2.0
1,179,301	-		PFLU_RS05290	0.59	+0.2
1,179,301	-		PFLU_RS05290	0.59	-1.8
1,179,301	-		PFLU_RS05290	0.59	-0.5
1,179,303	+		PFLU_RS05290	0.59	-1.1
1,179,303	+		PFLU_RS05290	0.59	+0.4
1,179,303	+		PFLU_RS05290	0.59	-0.6
1,179,303	+		PFLU_RS05290	0.59	+1.9
1,179,304	-		PFLU_RS05290	0.59	-0.9
1,179,304	-		PFLU_RS05290	0.59	-1.5
1,179,320	+		PFLU_RS05290	0.61	+0.4
1,179,320	+		PFLU_RS05290	0.61	-1.9
1,179,320	+		PFLU_RS05290	0.61	+0.6
1,179,320	+		PFLU_RS05290	0.61	-1.6
1,179,320	+		PFLU_RS05290	0.61	+0.9
1,179,320	+		PFLU_RS05290	0.61	-0.3
1,179,320	+		PFLU_RS05290	0.61	-2.3
1,179,320	+		PFLU_RS05290	0.61	-0.5
1,179,321	-		PFLU_RS05290	0.61	+0.5
1,179,321	-		PFLU_RS05290	0.61	-0.1
1,179,321	-		PFLU_RS05290	0.61	-1.3
1,179,321	-		PFLU_RS05290	0.61	+1.8
1,179,321	-		PFLU_RS05290	0.61	-0.7
1,179,321	-		PFLU_RS05290	0.61	-1.1
1,179,321	-		PFLU_RS05290	0.61	-1.1
1,179,321	-		PFLU_RS05290	0.61	-0.1
1,179,321	-		PFLU_RS05290	0.61	-0.7
1,179,321	-		PFLU_RS05290	0.61	-0.1
1,179,720	+				+1.9
1,179,720	+				+1.2
1,179,721	-				-0.9
1,179,721	-				-0.9
1,180,130	+		PFLU_RS05295	0.59	-0.3
1,180,131	-		PFLU_RS05295	0.59	+1.1
1,180,164	+		PFLU_RS05295	0.64	-2.7
1,180,250	+		PFLU_RS05295	0.75	-0.5
1,180,250	+		PFLU_RS05295	0.75	+0.5
1,180,250	+		PFLU_RS05295	0.75	-0.1
1,180,250	+		PFLU_RS05295	0.75	-0.9
1,180,250	+		PFLU_RS05295	0.75	-2.6
1,180,250	+		PFLU_RS05295	0.75	-1.1
1,180,250	+		PFLU_RS05295	0.75	+0.3
1,180,250	+		PFLU_RS05295	0.75	-3.0
1,180,250	+		PFLU_RS05295	0.75	-0.7
1,180,250	+		PFLU_RS05295	0.75	+0.8
1,180,250	+		PFLU_RS05295	0.75	+0.9
1,180,250	+		PFLU_RS05295	0.75	+1.4
1,180,250	+		PFLU_RS05295	0.75	-1.8
1,180,251	-		PFLU_RS05295	0.75	+0.9
1,180,251	-		PFLU_RS05295	0.75	-2.4
1,180,251	-		PFLU_RS05295	0.75	+1.3
1,180,251	-		PFLU_RS05295	0.75	+1.7
1,180,251	-		PFLU_RS05295	0.75	-1.5
1,180,251	-		PFLU_RS05295	0.75	-1.3
1,180,251	-		PFLU_RS05295	0.75	+0.9
1,180,411	+				+2.4
1,180,525	+				-3.1
1,180,526	-				+0.7
1,180,526	-				+1.5
1,180,526	-				+0.2
1,180,552	-				+0.7
1,180,612	+				-1.1
1,180,612	+				+0.3
1,180,612	+				-0.5
1,180,612	+				+1.5
1,180,615	+				+1.2
1,180,615	+				-0.4
1,180,616	-				+0.3
1,180,616	-				+1.0
1,180,616	-				-0.5
1,180,637	+				-0.4
1,180,637	+				+0.5
1,180,675	+				+2.1
1,180,675	+				+0.7
1,180,675	+				-2.3
1,180,675	+				-2.1
1,180,676	-				-2.2
1,180,676	-				+0.2
1,180,693	+		PFLU_RS05300	0.11	+1.4