Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS04870

Experiment: Choline chloride 10 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline chloride 10 mM (C)
1,086,800	+				+0.7
1,086,846	+				+0.7
1,086,847	-				+0.0
1,086,890	+				-1.4
1,086,891	-				-1.3
1,086,891	-				-2.1
1,086,891	-				-0.4
1,087,026	+				+2.1
1,087,026	+				+1.7
1,087,026	+				+1.1
1,087,026	+				+1.9
1,087,026	+				+0.4
1,087,027	-				+1.9
1,087,027	-				+0.9
1,087,027	-				-1.4
1,087,030	+				-0.9
1,087,030	+				-2.3
1,087,030	+				-2.1
1,087,093	+				+2.4
1,087,093	+				+0.3
1,087,094	-				+0.7
1,087,094	-				+2.1
1,087,094	-				-1.7
1,087,094	-				-1.3
1,087,094	-				+1.2
1,087,094	-				+0.0
1,087,162	+		PFLU_RS04865	0.20	+1.1
1,087,162	+		PFLU_RS04865	0.20	-0.6
1,087,162	+		PFLU_RS04865	0.20	+0.7
1,087,162	+		PFLU_RS04865	0.20	-1.7
1,087,162	+		PFLU_RS04865	0.20	+1.9
1,087,162	+		PFLU_RS04865	0.20	+0.2
1,087,162	+		PFLU_RS04865	0.20	+1.9
1,087,163	-		PFLU_RS04865	0.20	-2.1
1,087,163	-		PFLU_RS04865	0.20	+1.3
1,087,163	-		PFLU_RS04865	0.20	+0.3
1,087,375	+		PFLU_RS04865	0.53	+0.1
1,087,375	+		PFLU_RS04865	0.53	+0.3
1,087,375	+		PFLU_RS04865	0.53	-2.8
1,087,375	+		PFLU_RS04865	0.53	-0.4
1,087,375	+		PFLU_RS04865	0.53	-1.1
1,087,375	+		PFLU_RS04865	0.53	+0.7
1,087,375	+		PFLU_RS04865	0.53	+0.3
1,087,375	+		PFLU_RS04865	0.53	-2.0
1,087,375	+		PFLU_RS04865	0.53	+0.9
1,087,375	+		PFLU_RS04865	0.53	+0.6
1,087,375	+		PFLU_RS04865	0.53	+0.3
1,087,375	+		PFLU_RS04865	0.53	-0.7
1,087,375	+		PFLU_RS04865	0.53	-2.3
1,087,375	+		PFLU_RS04865	0.53	-0.8
1,087,375	+		PFLU_RS04865	0.53	-0.9
1,087,375	+		PFLU_RS04865	0.53	-1.6
1,087,376	-		PFLU_RS04865	0.53	-1.4
1,087,376	-		PFLU_RS04865	0.53	-2.0
1,087,376	-		PFLU_RS04865	0.53	-2.7
1,087,376	-		PFLU_RS04865	0.53	+0.7
1,087,376	-		PFLU_RS04865	0.53	-1.8
1,087,376	-		PFLU_RS04865	0.53	+0.3
1,087,376	-		PFLU_RS04865	0.53	+0.9
1,087,376	-		PFLU_RS04865	0.53	-0.6
1,087,376	-		PFLU_RS04865	0.53	+1.0
1,087,376	-		PFLU_RS04865	0.53	-0.7
1,087,376	-		PFLU_RS04865	0.53	+0.0
1,087,378	+		PFLU_RS04865	0.53	+0.3
1,087,378	+		PFLU_RS04865	0.53	-0.9
1,087,379	-		PFLU_RS04865	0.54	-0.3
1,087,379	-		PFLU_RS04865	0.54	-1.8
1,087,379	-		PFLU_RS04865	0.54	+0.4
1,087,379	-		PFLU_RS04865	0.54	-1.9
1,087,379	-		PFLU_RS04865	0.54	+0.7
1,087,432	+		PFLU_RS04865	0.62	+0.1
1,087,432	+		PFLU_RS04865	0.62	+0.9
1,087,432	+		PFLU_RS04865	0.62	-0.7
1,087,432	+		PFLU_RS04865	0.62	-0.2
1,087,433	-		PFLU_RS04865	0.62	+1.0
1,087,537	+		PFLU_RS04865	0.78	-1.1
1,087,537	+		PFLU_RS04865	0.78	-2.1
1,087,537	+		PFLU_RS04865	0.78	+0.6
1,087,538	-		PFLU_RS04865	0.78	+1.0
1,087,579	+		PFLU_RS04865	0.84	+2.6
1,087,579	+		PFLU_RS04865	0.84	+1.7
1,087,580	-		PFLU_RS04865	0.84	+0.3
1,087,580	-		PFLU_RS04865	0.84	+1.3
1,087,615	-		PFLU_RS04865	0.90	-0.9
1,087,667	+				+0.9
1,087,667	+				+0.3
1,087,667	+				+1.1
1,087,668	-				-0.9
1,087,668	-				+1.6
1,087,670	+				+1.6
1,087,670	+				-0.0
1,087,671	-				-2.0
1,087,671	-				-1.8
1,087,689	+				+2.6
1,087,689	+				-0.1
1,087,690	-				+2.1
1,087,690	-				-1.3
1,087,749	+				+1.5
1,087,749	+				+1.0
1,087,749	+				-0.7
1,087,749	+				-0.7
1,087,749	+				+0.7
1,087,749	+				-2.3
1,087,750	-				-0.7
1,087,750	-				-0.7
1,087,750	-				-0.9
1,087,750	-				-2.4
1,087,788	+				-2.8
1,087,788	+				-2.7
1,087,788	+				+1.3
1,087,788	+				+0.2
1,087,789	-				-0.9
1,087,789	-				+0.9
1,087,844	+		PFLU_RS04870	0.12	-3.2
1,087,844	+		PFLU_RS04870	0.12	-0.7
1,087,844	+		PFLU_RS04870	0.12	+0.6
1,087,845	-		PFLU_RS04870	0.12	+2.3
1,087,845	-		PFLU_RS04870	0.12	+1.5
1,087,910	+		PFLU_RS04870	0.18	+1.1
1,087,910	+		PFLU_RS04870	0.18	+0.3
1,087,910	+		PFLU_RS04870	0.18	-1.9
1,087,952	+		PFLU_RS04870	0.21	+0.3
1,087,953	-		PFLU_RS04870	0.21	+1.9
1,087,953	-		PFLU_RS04870	0.21	+0.5
1,088,007	+		PFLU_RS04870	0.26	+1.5
1,088,007	+		PFLU_RS04870	0.26	+1.1
1,088,021	+		PFLU_RS04870	0.27	+2.7
1,088,022	-		PFLU_RS04870	0.27	+2.9
1,088,167	+		PFLU_RS04870	0.39	-0.1
1,088,168	-		PFLU_RS04870	0.40	-0.1
1,088,558	+		PFLU_RS04870	0.72	+1.9
1,088,558	+		PFLU_RS04870	0.72	-0.1
1,088,559	-		PFLU_RS04870	0.73	-0.3
1,088,559	-		PFLU_RS04870	0.73	+4.2
1,088,559	-		PFLU_RS04870	0.73	-1.8
1,088,615	+		PFLU_RS04870	0.77	-1.8
1,088,616	-		PFLU_RS04870	0.77	+1.8
1,088,673	-		PFLU_RS04870	0.82	+2.0
1,088,673	-		PFLU_RS04870	0.82	-2.3
1,088,673	-		PFLU_RS04870	0.82	+1.8
1,088,673	-		PFLU_RS04870	0.82	+1.6
1,088,729	+		PFLU_RS04870	0.87	-1.1
1,088,729	+		PFLU_RS04870	0.87	+1.1
1,088,730	-		PFLU_RS04870	0.87	-1.6
1,088,858	+				-1.0
1,088,858	+				+2.9
1,088,858	+				-1.1
1,088,858	+				+0.6
1,088,858	+				-1.1
1,088,859	-				-2.5
1,088,859	-				+0.8
1,088,859	-				+1.9
1,088,859	-				-3.3
1,088,859	-				-2.3
1,088,908	+				-1.1
1,088,909	-				-0.7
1,088,909	-				-1.1
1,088,909	-				+0.3
1,088,989	+				-1.9
1,088,989	+				+0.3
1,088,990	-				+1.9
1,088,990	-				+3.2
1,089,087	+		PFLU_RS04875	0.13	-2.3
1,089,145	+		PFLU_RS04875	0.16	-0.3
1,089,145	+		PFLU_RS04875	0.16	+2.2
1,089,145	+		PFLU_RS04875	0.16	-3.0
1,089,146	-		PFLU_RS04875	0.16	-0.1
1,089,146	-		PFLU_RS04875	0.16	+0.9
1,089,181	+		PFLU_RS04875	0.19	+0.3
1,089,274	+		PFLU_RS04875	0.25	-2.0
1,089,274	+		PFLU_RS04875	0.25	+1.1
1,089,274	+		PFLU_RS04875	0.25	+0.2
1,089,274	+		PFLU_RS04875	0.25	-1.4
1,089,274	+		PFLU_RS04875	0.25	-0.9
1,089,274	+		PFLU_RS04875	0.25	-2.9
1,089,274	+		PFLU_RS04875	0.25	+0.4
1,089,274	+		PFLU_RS04875	0.25	-0.1
1,089,274	+		PFLU_RS04875	0.25	-1.1
1,089,275	-		PFLU_RS04875	0.25	+0.9
1,089,275	-		PFLU_RS04875	0.25	-1.4
1,089,275	-		PFLU_RS04875	0.25	+2.6
1,089,275	-		PFLU_RS04875	0.25	+2.5
1,089,275	-		PFLU_RS04875	0.25	+0.9
1,089,275	-		PFLU_RS04875	0.25	+1.9
1,089,275	-		PFLU_RS04875	0.25	-1.4
1,089,275	-		PFLU_RS04875	0.25	-1.0
1,089,275	-		PFLU_RS04875	0.25	+1.0
1,089,275	-		PFLU_RS04875	0.25	+1.0
1,089,275	-		PFLU_RS04875	0.25	-1.3
1,089,275	-		PFLU_RS04875	0.25	+0.3
1,089,275	-		PFLU_RS04875	0.25	-2.1
1,089,278	+		PFLU_RS04875	0.25	-2.9
1,089,278	+		PFLU_RS04875	0.25	-2.8
1,089,278	+		PFLU_RS04875	0.25	-1.3
1,089,278	+		PFLU_RS04875	0.25	-2.8
1,089,278	+		PFLU_RS04875	0.25	-1.6
1,089,278	+		PFLU_RS04875	0.25	+0.8
1,089,279	-		PFLU_RS04875	0.25	+0.3
1,089,279	-		PFLU_RS04875	0.25	+0.1
1,089,279	-		PFLU_RS04875	0.25	-1.3
1,089,279	-		PFLU_RS04875	0.25	+1.1
1,089,344	+		PFLU_RS04875	0.29	+1.2
1,089,344	+		PFLU_RS04875	0.29	+0.6
1,089,344	+		PFLU_RS04875	0.29	+1.9
1,089,344	+		PFLU_RS04875	0.29	+1.4
1,089,345	-		PFLU_RS04875	0.29	+0.7
1,089,345	-		PFLU_RS04875	0.29	+0.1
1,089,445	+		PFLU_RS04875	0.36	+0.5
1,089,445	+		PFLU_RS04875	0.36	-2.1
1,089,445	+		PFLU_RS04875	0.36	-2.1
1,089,445	+		PFLU_RS04875	0.36	+1.4
1,089,445	+		PFLU_RS04875	0.36	-0.2
1,089,445	+		PFLU_RS04875	0.36	+0.5
1,089,445	+		PFLU_RS04875	0.36	-0.2
1,089,445	+		PFLU_RS04875	0.36	-1.9
1,089,445	+		PFLU_RS04875	0.36	+1.9
1,089,445	+		PFLU_RS04875	0.36	-1.3
1,089,445	+		PFLU_RS04875	0.36	-0.8
1,089,445	+		PFLU_RS04875	0.36	-1.9
1,089,445	+		PFLU_RS04875	0.36	-0.1
1,089,445	+		PFLU_RS04875	0.36	+1.3
1,089,445	+		PFLU_RS04875	0.36	-0.8
1,089,445	+		PFLU_RS04875	0.36	+0.2
1,089,445	+		PFLU_RS04875	0.36	-1.9
1,089,445	+		PFLU_RS04875	0.36	-2.6
1,089,445	+		PFLU_RS04875	0.36	+1.3
1,089,445	+		PFLU_RS04875	0.36	+0.3
1,089,445	+		PFLU_RS04875	0.36	+0.9
1,089,445	+		PFLU_RS04875	0.36	-1.7
1,089,445	+		PFLU_RS04875	0.36	+0.9
1,089,446	-		PFLU_RS04875	0.36	+0.9
1,089,446	-		PFLU_RS04875	0.36	-2.0
1,089,446	-		PFLU_RS04875	0.36	-0.8
1,089,446	-		PFLU_RS04875	0.36	-1.9
1,089,446	-		PFLU_RS04875	0.36	+1.2
1,089,446	-		PFLU_RS04875	0.36	+2.8
1,089,446	-		PFLU_RS04875	0.36	+3.0
1,089,446	-		PFLU_RS04875	0.36	+0.8
1,089,446	-		PFLU_RS04875	0.36	-1.9
1,089,446	-		PFLU_RS04875	0.36	+3.5
1,089,446	-		PFLU_RS04875	0.36	+1.5
1,089,446	-		PFLU_RS04875	0.36	+0.0
1,089,446	-		PFLU_RS04875	0.36	-0.7
1,089,446	-		PFLU_RS04875	0.36	-0.7
1,089,505	+		PFLU_RS04875	0.40	-0.9
1,089,506	-		PFLU_RS04875	0.40	-1.3
1,089,524	+		PFLU_RS04875	0.41	+0.3
1,089,524	+		PFLU_RS04875	0.41	+1.2
1,089,525	-		PFLU_RS04875	0.41	-1.1
1,089,525	-		PFLU_RS04875	0.41	+4.5
1,089,547	+		PFLU_RS04875	0.43	-0.8
1,089,547	+		PFLU_RS04875	0.43	+1.5
1,089,547	+		PFLU_RS04875	0.43	+1.7
1,089,547	+		PFLU_RS04875	0.43	+2.6
1,089,547	+		PFLU_RS04875	0.43	-2.0
1,089,547	+		PFLU_RS04875	0.43	-2.8
1,089,547	+		PFLU_RS04875	0.43	+0.5
1,089,547	+		PFLU_RS04875	0.43	+0.7
1,089,547	+		PFLU_RS04875	0.43	-0.8
1,089,547	+		PFLU_RS04875	0.43	+2.9
1,089,547	+		PFLU_RS04875	0.43	+1.7
1,089,547	+		PFLU_RS04875	0.43	+0.1
1,089,547	+		PFLU_RS04875	0.43	+1.0
1,089,547	+		PFLU_RS04875	0.43	-2.6
1,089,547	+		PFLU_RS04875	0.43	-0.3
1,089,547	+		PFLU_RS04875	0.43	-2.6
1,089,547	+		PFLU_RS04875	0.43	-0.5
1,089,547	+		PFLU_RS04875	0.43	-2.3
1,089,547	+		PFLU_RS04875	0.43	+1.2
1,089,548	-		PFLU_RS04875	0.43	+1.2
1,089,548	-		PFLU_RS04875	0.43	+0.7
1,089,548	-		PFLU_RS04875	0.43	-0.3
1,089,548	-		PFLU_RS04875	0.43	-2.5
1,089,548	-		PFLU_RS04875	0.43	+2.1
1,089,548	-		PFLU_RS04875	0.43	+1.5
1,089,548	-		PFLU_RS04875	0.43	+1.2
1,089,548	-		PFLU_RS04875	0.43	-0.7
1,089,548	-		PFLU_RS04875	0.43	-1.1
1,089,548	-		PFLU_RS04875	0.43	-1.8
1,089,548	-		PFLU_RS04875	0.43	+2.5
1,089,548	-		PFLU_RS04875	0.43	-2.4
1,089,548	-		PFLU_RS04875	0.43	+1.0
1,089,548	-		PFLU_RS04875	0.43	+0.3
1,089,548	-		PFLU_RS04875	0.43	+1.0
1,089,548	-		PFLU_RS04875	0.43	-1.3
1,089,548	-		PFLU_RS04875	0.43	+2.5
1,089,548	-		PFLU_RS04875	0.43	-1.4
1,089,548	-		PFLU_RS04875	0.43	-2.1
1,089,548	-		PFLU_RS04875	0.43	+0.9
1,089,548	-		PFLU_RS04875	0.43	+0.0
1,089,554	-		PFLU_RS04875	0.43	-1.7
1,089,554	-		PFLU_RS04875	0.43	-1.3
1,089,554	-		PFLU_RS04875	0.43	+1.1
1,089,622	+		PFLU_RS04875	0.47	+0.4
1,089,622	+		PFLU_RS04875	0.47	-2.1
1,089,622	+		PFLU_RS04875	0.47	+0.9
1,089,622	+		PFLU_RS04875	0.47	-1.6
1,089,623	-		PFLU_RS04875	0.47	+0.8
1,089,623	-		PFLU_RS04875	0.47	+0.3
1,089,623	-		PFLU_RS04875	0.47	-0.2
1,089,623	-		PFLU_RS04875	0.47	-0.1
1,089,623	-		PFLU_RS04875	0.47	-0.4
1,089,623	-		PFLU_RS04875	0.47	-1.4
1,089,623	-		PFLU_RS04875	0.47	-0.9
1,089,623	-		PFLU_RS04875	0.47	-0.4
1,089,691	+		PFLU_RS04875	0.52	+4.2
1,089,691	+		PFLU_RS04875	0.52	-2.2
1,089,709	+		PFLU_RS04875	0.53	+1.4
1,089,710	-		PFLU_RS04875	0.53	-1.7
1,089,710	-		PFLU_RS04875	0.53	-0.9
1,089,710	-		PFLU_RS04875	0.53	-2.0