Experiment: Choline chloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS04005 and PFLU_RS04010 are separated by 293 nucleotides PFLU_RS04010 and PFLU_RS04015 are separated by 0 nucleotides PFLU_RS04015 and PFLU_RS04020 are separated by 11 nucleotides
PFLU_RS04005: PFLU_RS04005 - catabolite repressor/activator, at 903,790 to 904,785
_RS04005
PFLU_RS04010: PFLU_RS04010 - phosphoenolpyruvate--protein phosphotransferase, at 905,079 to 907,937
_RS04010
PFLU_RS04015: PFLU_RS04015 - 1-phosphofructokinase, at 907,938 to 908,858
_RS04015
PFLU_RS04020: PFLU_RS04020 - PTS fructose-like transporter subunit IIB, at 908,870 to 910,582
_RS04020
Position (kb) 905
906
907
908 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 904.087 kb on + strand, within PFLU_RS04005 at 904.087 kb on + strand, within PFLU_RS04005 at 904.087 kb on + strand, within PFLU_RS04005 at 904.087 kb on + strand, within PFLU_RS04005 at 904.087 kb on + strand, within PFLU_RS04005 at 904.088 kb on - strand, within PFLU_RS04005 at 904.088 kb on - strand, within PFLU_RS04005 at 904.088 kb on - strand, within PFLU_RS04005 at 904.088 kb on - strand, within PFLU_RS04005 at 904.512 kb on - strand, within PFLU_RS04005 at 904.559 kb on + strand, within PFLU_RS04005 at 904.559 kb on + strand, within PFLU_RS04005 at 904.559 kb on + strand, within PFLU_RS04005 at 904.559 kb on + strand, within PFLU_RS04005 at 904.587 kb on + strand, within PFLU_RS04005 at 904.588 kb on - strand, within PFLU_RS04005 at 904.645 kb on - strand, within PFLU_RS04005 at 904.645 kb on - strand, within PFLU_RS04005 at 904.645 kb on - strand, within PFLU_RS04005 at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.730 kb on + strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.731 kb on - strand at 904.858 kb on + strand at 904.858 kb on + strand at 904.858 kb on + strand at 904.858 kb on + strand at 904.858 kb on + strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.859 kb on - strand at 904.910 kb on + strand at 904.921 kb on - strand at 904.950 kb on + strand at 905.005 kb on + strand at 905.006 kb on - strand at 905.006 kb on - strand at 905.010 kb on - strand at 905.010 kb on - strand at 905.010 kb on - strand at 905.010 kb on - strand at 905.022 kb on + strand at 905.022 kb on + strand at 905.022 kb on + strand at 905.023 kb on - strand at 905.023 kb on - strand at 905.023 kb on - strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.043 kb on + strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.044 kb on - strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.047 kb on + strand at 905.048 kb on - strand at 905.048 kb on - strand at 905.048 kb on - strand at 905.048 kb on - strand at 905.048 kb on - strand at 905.048 kb on - strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.063 kb on + strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.064 kb on - strand at 905.067 kb on + strand at 905.067 kb on + strand at 905.067 kb on + strand at 905.067 kb on + strand at 905.067 kb on + strand at 905.067 kb on + strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.068 kb on - strand at 905.095 kb on + strand at 905.095 kb on + strand at 905.095 kb on + strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.096 kb on - strand at 905.130 kb on - strand at 905.130 kb on - strand at 905.130 kb on - strand at 905.130 kb on - strand at 905.194 kb on - strand at 905.249 kb on + strand at 905.249 kb on + strand at 905.249 kb on + strand at 905.249 kb on + strand at 905.249 kb on + strand at 905.250 kb on - strand at 905.250 kb on - strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.356 kb on + strand at 905.357 kb on - strand at 905.357 kb on - strand at 905.357 kb on - strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.358 kb on + strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.359 kb on - strand at 905.748 kb on + strand, within PFLU_RS04010 at 905.749 kb on - strand, within PFLU_RS04010 at 906.714 kb on + strand, within PFLU_RS04010 at 906.714 kb on + strand, within PFLU_RS04010 at 906.714 kb on + strand, within PFLU_RS04010 at 906.714 kb on + strand, within PFLU_RS04010 at 906.714 kb on + strand, within PFLU_RS04010 at 906.715 kb on - strand, within PFLU_RS04010 at 906.715 kb on - strand, within PFLU_RS04010 at 906.715 kb on - strand, within PFLU_RS04010 at 906.715 kb on - strand, within PFLU_RS04010 at 906.715 kb on - strand, within PFLU_RS04010 at 906.821 kb on + strand, within PFLU_RS04010 at 906.842 kb on + strand, within PFLU_RS04010 at 907.197 kb on + strand, within PFLU_RS04010 at 907.198 kb on - strand, within PFLU_RS04010 at 907.198 kb on - strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.210 kb on + strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.211 kb on - strand, within PFLU_RS04010 at 907.605 kb on + strand, within PFLU_RS04010 at 907.605 kb on + strand, within PFLU_RS04010 at 907.606 kb on - strand, within PFLU_RS04010 at 907.606 kb on - strand, within PFLU_RS04010 at 907.922 kb on - strand at 907.935 kb on + strand at 907.935 kb on + strand at 907.935 kb on + strand at 907.935 kb on + strand at 907.935 kb on + strand at 907.935 kb on + strand at 907.936 kb on - strand at 907.936 kb on - strand at 908.213 kb on + strand, within PFLU_RS04015 at 908.213 kb on + strand, within PFLU_RS04015 at 908.214 kb on - strand, within PFLU_RS04015 at 908.214 kb on - strand, within PFLU_RS04015 at 908.607 kb on + strand, within PFLU_RS04015 at 908.607 kb on + strand, within PFLU_RS04015 at 908.607 kb on + strand, within PFLU_RS04015 at 908.608 kb on - strand, within PFLU_RS04015 at 908.642 kb on + strand, within PFLU_RS04015 at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.856 kb on + strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.857 kb on - strand at 908.877 kb on + strand at 908.877 kb on + strand at 908.878 kb on - strand at 908.888 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C) remove 904,087 + PFLU_RS04005 0.30 -2.1 904,087 + PFLU_RS04005 0.30 -1.7 904,087 + PFLU_RS04005 0.30 -1.0 904,087 + PFLU_RS04005 0.30 +1.6 904,087 + PFLU_RS04005 0.30 -0.7 904,088 - PFLU_RS04005 0.30 +0.3 904,088 - PFLU_RS04005 0.30 -0.4 904,088 - PFLU_RS04005 0.30 +1.9 904,088 - PFLU_RS04005 0.30 +3.1 904,512 - PFLU_RS04005 0.72 +0.9 904,559 + PFLU_RS04005 0.77 -1.4 904,559 + PFLU_RS04005 0.77 -0.4 904,559 + PFLU_RS04005 0.77 +1.1 904,559 + PFLU_RS04005 0.77 +1.0 904,587 + PFLU_RS04005 0.80 +1.7 904,588 - PFLU_RS04005 0.80 +0.3 904,645 - PFLU_RS04005 0.86 -2.9 904,645 - PFLU_RS04005 0.86 -0.7 904,645 - PFLU_RS04005 0.86 -2.3 904,730 + -2.5 904,730 + +2.3 904,730 + -0.9 904,730 + -1.1 904,730 + -0.4 904,730 + -2.2 904,730 + +2.9 904,730 + +0.5 904,731 - -2.6 904,731 - -0.9 904,731 - -0.1 904,731 - -0.5 904,731 - +0.9 904,731 - -0.4 904,731 - -0.4 904,731 - +0.4 904,731 - +1.0 904,731 - -1.9 904,731 - +1.9 904,731 - -0.1 904,731 - -2.0 904,731 - -1.9 904,858 + -2.4 904,858 + -1.8 904,858 + -1.9 904,858 + +0.0 904,858 + +1.4 904,859 - +0.2 904,859 - +1.9 904,859 - +0.9 904,859 - +1.3 904,859 - -1.1 904,859 - -1.8 904,859 - -0.4 904,859 - +0.7 904,859 - +2.7 904,910 + -0.1 904,921 - +2.4 904,950 + +1.2 905,005 + -1.1 905,006 - +0.2 905,006 - -2.1 905,010 - -0.9 905,010 - +0.1 905,010 - +0.9 905,010 - -0.3 905,022 + -1.2 905,022 + -1.2 905,022 + -2.4 905,023 - -1.0 905,023 - -2.3 905,023 - -0.1 905,043 + +2.7 905,043 + +0.2 905,043 + +1.3 905,043 + -0.2 905,043 + -0.2 905,043 + +0.9 905,043 + -0.7 905,043 + +0.7 905,043 + -0.2 905,043 + +0.6 905,044 - +0.3 905,044 - +0.7 905,044 - -2.5 905,044 - +2.2 905,044 - +0.2 905,044 - -1.4 905,044 - -1.8 905,044 - +0.2 905,047 + +0.8 905,047 + -2.1 905,047 + +0.2 905,047 + +2.0 905,047 + +0.8 905,047 + +1.1 905,047 + -0.7 905,048 - -0.7 905,048 - -0.2 905,048 - -1.2 905,048 - -3.1 905,048 - +0.9 905,048 - +0.7 905,063 + +1.5 905,063 + -1.8 905,063 + -1.1 905,063 + +1.9 905,063 + +1.9 905,063 + -1.1 905,063 + +1.0 905,063 + -0.7 905,063 + +0.9 905,064 - -1.7 905,064 - -2.6 905,064 - -2.0 905,064 - -2.1 905,064 - +0.3 905,064 - +0.8 905,064 - -2.5 905,064 - +1.6 905,064 - -1.7 905,067 + -0.9 905,067 + -0.8 905,067 + -0.0 905,067 + -1.5 905,067 + +1.0 905,067 + -1.1 905,068 - -0.9 905,068 - -1.4 905,068 - +0.5 905,068 - -0.9 905,068 - +1.8 905,068 - +0.8 905,068 - +0.2 905,068 - -1.1 905,095 + +1.3 905,095 + +2.2 905,095 + +1.5 905,096 - +0.5 905,096 - -1.7 905,096 - +0.8 905,096 - -2.5 905,096 - +2.2 905,096 - -1.9 905,096 - +1.9 905,096 - +0.5 905,130 - +2.3 905,130 - +0.8 905,130 - +0.6 905,130 - -1.5 905,194 - +0.7 905,249 + -0.7 905,249 + -0.2 905,249 + +1.3 905,249 + -0.6 905,249 + -1.1 905,250 - +1.7 905,250 - +1.6 905,356 + -0.2 905,356 + +1.5 905,356 + -2.2 905,356 + -1.7 905,356 + -1.9 905,356 + -0.9 905,356 + -1.2 905,357 - -1.6 905,357 - -0.1 905,357 - +0.5 905,358 + -0.7 905,358 + +1.4 905,358 + -0.3 905,358 + +1.2 905,358 + -1.7 905,358 + -0.9 905,358 + +0.9 905,359 - +0.3 905,359 - -1.0 905,359 - -1.1 905,359 - +2.4 905,359 - +0.1 905,359 - +1.3 905,359 - +3.0 905,359 - +1.0 905,359 - +1.0 905,359 - +2.4 905,359 - -0.3 905,748 + PFLU_RS04010 0.23 -1.9 905,749 - PFLU_RS04010 0.23 +0.8 906,714 + PFLU_RS04010 0.57 +0.1 906,714 + PFLU_RS04010 0.57 +2.0 906,714 + PFLU_RS04010 0.57 +1.7 906,714 + PFLU_RS04010 0.57 +1.1 906,714 + PFLU_RS04010 0.57 -1.9 906,715 - PFLU_RS04010 0.57 +0.7 906,715 - PFLU_RS04010 0.57 +1.2 906,715 - PFLU_RS04010 0.57 -0.3 906,715 - PFLU_RS04010 0.57 -2.7 906,715 - PFLU_RS04010 0.57 +0.6 906,821 + PFLU_RS04010 0.61 -0.4 906,842 + PFLU_RS04010 0.62 +1.7 907,197 + PFLU_RS04010 0.74 +1.2 907,198 - PFLU_RS04010 0.74 +1.1 907,198 - PFLU_RS04010 0.74 -0.0 907,210 + PFLU_RS04010 0.75 +0.7 907,210 + PFLU_RS04010 0.75 +2.3 907,210 + PFLU_RS04010 0.75 +1.5 907,210 + PFLU_RS04010 0.75 -0.5 907,210 + PFLU_RS04010 0.75 +0.9 907,210 + PFLU_RS04010 0.75 +1.1 907,211 - PFLU_RS04010 0.75 +1.1 907,211 - PFLU_RS04010 0.75 -1.1 907,211 - PFLU_RS04010 0.75 +1.1 907,211 - PFLU_RS04010 0.75 +1.8 907,211 - PFLU_RS04010 0.75 +1.9 907,211 - PFLU_RS04010 0.75 -0.7 907,605 + PFLU_RS04010 0.88 +1.0 907,605 + PFLU_RS04010 0.88 -1.5 907,606 - PFLU_RS04010 0.88 +1.8 907,606 - PFLU_RS04010 0.88 -0.7 907,922 - +1.9 907,935 + +3.2 907,935 + +1.7 907,935 + -2.6 907,935 + -1.8 907,935 + -1.7 907,935 + -1.7 907,936 - +1.8 907,936 - -2.1 908,213 + PFLU_RS04015 0.30 -0.1 908,213 + PFLU_RS04015 0.30 -0.1 908,214 - PFLU_RS04015 0.30 -0.1 908,214 - PFLU_RS04015 0.30 -0.1 908,607 + PFLU_RS04015 0.73 +0.3 908,607 + PFLU_RS04015 0.73 +2.3 908,607 + PFLU_RS04015 0.73 -0.9 908,608 - PFLU_RS04015 0.73 +1.7 908,642 + PFLU_RS04015 0.76 +3.9 908,856 + -0.4 908,856 + +0.0 908,856 + +0.1 908,856 + +1.0 908,856 + +0.6 908,856 + -0.5 908,856 + +0.3 908,856 + -0.1 908,856 + +3.3 908,857 - +0.6 908,857 - -0.9 908,857 - -0.3 908,857 - +1.6 908,857 - -0.9 908,857 - +1.0 908,857 - +1.0 908,857 - -1.7 908,857 - +1.1 908,857 - +0.7 908,857 - -0.1 908,857 - +0.4 908,877 + -0.8 908,877 + -0.9 908,878 - +1.9 908,888 - +0.1
Or see this region's nucleotide sequence