Experiment: Choline chloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03920 and PFLU_RS03925 are separated by 75 nucleotides PFLU_RS03925 and PFLU_RS03930 overlap by 4 nucleotides PFLU_RS03930 and PFLU_RS03935 overlap by 4 nucleotides PFLU_RS03935 and PFLU_RS03940 overlap by 4 nucleotides
PFLU_RS03920: PFLU_RS03920 - membrane protein, at 888,228 to 888,917
_RS03920
PFLU_RS03925: PFLU_RS03925 - hypothetical protein, at 888,993 to 889,208
_RS03925
PFLU_RS03930: PFLU_RS03930 - DNA gyrase inhibitor YacG, at 889,205 to 889,405
_RS03930
PFLU_RS03935: PFLU_RS03935 - dephospho-CoA kinase, at 889,402 to 890,025
_RS03935
PFLU_RS03940: PFLU_RS03940 - prepilin peptidase, at 890,022 to 890,888
_RS03940
Position (kb) 889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 888.221 kb on + strand at 888.221 kb on + strand at 888.221 kb on + strand at 888.221 kb on + strand at 888.222 kb on - strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.282 kb on + strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.283 kb on - strand at 888.417 kb on - strand, within PFLU_RS03920 at 888.429 kb on + strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.430 kb on - strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.645 kb on + strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.646 kb on - strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.647 kb on + strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.648 kb on - strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.700 kb on + strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.701 kb on - strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.703 kb on + strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.704 kb on - strand, within PFLU_RS03920 at 888.876 kb on + strand at 888.876 kb on + strand at 888.876 kb on + strand at 888.877 kb on - strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.002 kb on + strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.003 kb on - strand at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.155 kb on + strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.156 kb on - strand, within PFLU_RS03925 at 889.188 kb on + strand at 889.188 kb on + strand at 889.188 kb on + strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.189 kb on - strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.196 kb on + strand at 889.197 kb on - strand at 889.197 kb on - strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.207 kb on - strand at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.270 kb on + strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.271 kb on - strand, within PFLU_RS03930 at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.425 kb on + strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 889.426 kb on - strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.047 kb on + strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.048 kb on - strand at 890.058 kb on + strand at 890.059 kb on - strand at 890.104 kb on + strand at 890.104 kb on + strand at 890.105 kb on - strand at 890.105 kb on - strand at 890.191 kb on - strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.307 kb on + strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.308 kb on - strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.326 kb on + strand, within PFLU_RS03940 at 890.327 kb on - strand, within PFLU_RS03940
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C) remove 888,221 + +1.0 888,221 + +0.8 888,221 + +1.1 888,221 + +0.1 888,222 - +0.9 888,282 + -1.1 888,282 + +0.9 888,282 + +0.4 888,282 + -1.0 888,282 + -3.6 888,282 + +1.7 888,282 + -3.1 888,282 + -1.2 888,282 + -2.7 888,282 + +0.2 888,282 + +0.9 888,282 + +0.3 888,282 + +1.3 888,282 + +1.9 888,282 + +0.6 888,282 + +1.2 888,282 + +0.3 888,283 - +3.1 888,283 - +1.2 888,283 - +2.3 888,283 - -2.5 888,283 - +0.1 888,283 - -0.5 888,283 - -0.7 888,283 - -0.7 888,283 - -2.0 888,283 - -0.4 888,283 - +0.8 888,417 - PFLU_RS03920 0.27 +1.7 888,429 + PFLU_RS03920 0.29 -0.7 888,430 - PFLU_RS03920 0.29 -1.9 888,430 - PFLU_RS03920 0.29 +0.3 888,430 - PFLU_RS03920 0.29 -2.0 888,645 + PFLU_RS03920 0.60 +3.1 888,645 + PFLU_RS03920 0.60 -3.0 888,645 + PFLU_RS03920 0.60 -1.9 888,645 + PFLU_RS03920 0.60 -1.9 888,645 + PFLU_RS03920 0.60 -2.1 888,645 + PFLU_RS03920 0.60 -0.0 888,645 + PFLU_RS03920 0.60 +0.1 888,645 + PFLU_RS03920 0.60 -0.9 888,645 + PFLU_RS03920 0.60 -1.2 888,645 + PFLU_RS03920 0.60 -0.6 888,645 + PFLU_RS03920 0.60 +0.5 888,645 + PFLU_RS03920 0.60 +0.7 888,645 + PFLU_RS03920 0.60 -1.9 888,645 + PFLU_RS03920 0.60 -0.4 888,645 + PFLU_RS03920 0.60 -1.5 888,645 + PFLU_RS03920 0.60 +0.3 888,645 + PFLU_RS03920 0.60 +1.2 888,645 + PFLU_RS03920 0.60 +0.9 888,645 + PFLU_RS03920 0.60 -0.4 888,645 + PFLU_RS03920 0.60 -3.0 888,645 + PFLU_RS03920 0.60 +1.2 888,645 + PFLU_RS03920 0.60 -1.4 888,645 + PFLU_RS03920 0.60 +1.3 888,645 + PFLU_RS03920 0.60 -3.6 888,645 + PFLU_RS03920 0.60 +0.0 888,645 + PFLU_RS03920 0.60 +1.4 888,645 + PFLU_RS03920 0.60 -2.7 888,645 + PFLU_RS03920 0.60 -0.7 888,645 + PFLU_RS03920 0.60 +0.7 888,645 + PFLU_RS03920 0.60 -1.9 888,645 + PFLU_RS03920 0.60 +0.9 888,645 + PFLU_RS03920 0.60 +0.5 888,646 - PFLU_RS03920 0.61 +2.0 888,646 - PFLU_RS03920 0.61 -1.9 888,646 - PFLU_RS03920 0.61 +0.3 888,646 - PFLU_RS03920 0.61 +0.9 888,646 - PFLU_RS03920 0.61 +1.0 888,646 - PFLU_RS03920 0.61 -0.5 888,646 - PFLU_RS03920 0.61 -2.2 888,646 - PFLU_RS03920 0.61 -0.3 888,646 - PFLU_RS03920 0.61 -1.5 888,646 - PFLU_RS03920 0.61 +0.6 888,646 - PFLU_RS03920 0.61 +0.2 888,646 - PFLU_RS03920 0.61 -1.1 888,646 - PFLU_RS03920 0.61 -1.8 888,646 - PFLU_RS03920 0.61 -1.4 888,646 - PFLU_RS03920 0.61 -1.4 888,646 - PFLU_RS03920 0.61 -0.7 888,646 - PFLU_RS03920 0.61 -0.1 888,646 - PFLU_RS03920 0.61 +0.1 888,646 - PFLU_RS03920 0.61 +0.8 888,646 - PFLU_RS03920 0.61 -2.2 888,646 - PFLU_RS03920 0.61 +0.9 888,646 - PFLU_RS03920 0.61 +0.3 888,646 - PFLU_RS03920 0.61 -0.2 888,646 - PFLU_RS03920 0.61 +1.3 888,646 - PFLU_RS03920 0.61 -0.2 888,646 - PFLU_RS03920 0.61 +0.9 888,646 - PFLU_RS03920 0.61 -1.1 888,647 + PFLU_RS03920 0.61 -1.2 888,647 + PFLU_RS03920 0.61 -1.2 888,647 + PFLU_RS03920 0.61 +2.5 888,647 + PFLU_RS03920 0.61 -1.4 888,647 + PFLU_RS03920 0.61 +0.9 888,647 + PFLU_RS03920 0.61 +1.1 888,647 + PFLU_RS03920 0.61 +1.8 888,647 + PFLU_RS03920 0.61 +2.7 888,647 + PFLU_RS03920 0.61 -1.1 888,647 + PFLU_RS03920 0.61 -2.1 888,647 + PFLU_RS03920 0.61 -1.4 888,647 + PFLU_RS03920 0.61 -1.8 888,648 - PFLU_RS03920 0.61 -2.4 888,648 - PFLU_RS03920 0.61 -2.1 888,648 - PFLU_RS03920 0.61 -0.3 888,648 - PFLU_RS03920 0.61 +0.5 888,648 - PFLU_RS03920 0.61 +1.5 888,648 - PFLU_RS03920 0.61 -0.4 888,648 - PFLU_RS03920 0.61 -1.5 888,648 - PFLU_RS03920 0.61 +2.1 888,648 - PFLU_RS03920 0.61 +1.3 888,648 - PFLU_RS03920 0.61 -2.2 888,648 - PFLU_RS03920 0.61 +2.6 888,648 - PFLU_RS03920 0.61 -1.2 888,700 + PFLU_RS03920 0.68 +0.3 888,700 + PFLU_RS03920 0.68 +0.8 888,700 + PFLU_RS03920 0.68 -0.9 888,700 + PFLU_RS03920 0.68 +1.6 888,700 + PFLU_RS03920 0.68 -1.8 888,700 + PFLU_RS03920 0.68 +1.2 888,701 - PFLU_RS03920 0.69 -2.8 888,701 - PFLU_RS03920 0.69 -3.3 888,701 - PFLU_RS03920 0.69 +0.7 888,703 + PFLU_RS03920 0.69 +0.9 888,703 + PFLU_RS03920 0.69 -0.1 888,703 + PFLU_RS03920 0.69 +1.5 888,704 - PFLU_RS03920 0.69 -2.1 888,704 - PFLU_RS03920 0.69 -1.7 888,704 - PFLU_RS03920 0.69 +1.4 888,704 - PFLU_RS03920 0.69 +0.4 888,704 - PFLU_RS03920 0.69 -0.3 888,876 + +0.6 888,876 + -1.4 888,876 + -2.5 888,877 - +2.4 889,002 + -2.3 889,002 + -1.1 889,002 + -0.9 889,002 + -1.7 889,002 + -1.1 889,002 + -2.7 889,002 + +2.5 889,002 + -2.2 889,002 + -2.5 889,003 - -2.3 889,003 - -2.6 889,003 - +1.8 889,003 - +1.6 889,003 - +0.9 889,155 + PFLU_RS03925 0.75 +1.3 889,155 + PFLU_RS03925 0.75 -1.0 889,155 + PFLU_RS03925 0.75 -0.7 889,155 + PFLU_RS03925 0.75 +0.2 889,155 + PFLU_RS03925 0.75 -1.0 889,156 - PFLU_RS03925 0.75 +0.1 889,156 - PFLU_RS03925 0.75 +0.8 889,156 - PFLU_RS03925 0.75 +1.4 889,156 - PFLU_RS03925 0.75 +1.7 889,156 - PFLU_RS03925 0.75 +0.3 889,156 - PFLU_RS03925 0.75 -1.0 889,156 - PFLU_RS03925 0.75 +1.8 889,156 - PFLU_RS03925 0.75 -0.7 889,156 - PFLU_RS03925 0.75 +0.5 889,156 - PFLU_RS03925 0.75 +0.3 889,188 + +0.7 889,188 + +0.0 889,188 + -2.4 889,189 - -1.2 889,189 - +0.3 889,189 - +1.3 889,189 - -0.1 889,189 - -1.7 889,189 - -1.2 889,196 + +1.9 889,196 + +2.1 889,196 + +1.3 889,197 - +1.9 889,197 - +1.4 889,206 + -0.3 889,206 + -2.1 889,207 - +0.4 889,270 + PFLU_RS03930 0.32 +1.7 889,270 + PFLU_RS03930 0.32 -2.4 889,270 + PFLU_RS03930 0.32 +0.3 889,270 + PFLU_RS03930 0.32 -0.4 889,270 + PFLU_RS03930 0.32 +2.1 889,270 + PFLU_RS03930 0.32 +0.5 889,271 - PFLU_RS03930 0.33 +1.4 889,271 - PFLU_RS03930 0.33 +1.6 889,271 - PFLU_RS03930 0.33 -1.7 889,271 - PFLU_RS03930 0.33 -1.2 889,271 - PFLU_RS03930 0.33 -0.7 889,271 - PFLU_RS03930 0.33 +2.9 889,271 - PFLU_RS03930 0.33 +0.2 889,271 - PFLU_RS03930 0.33 -0.6 889,425 + +1.2 889,425 + +0.7 889,425 + +0.8 889,425 + +1.1 889,425 + -0.7 889,425 + -0.1 889,426 - +1.4 889,426 - -2.6 889,426 - -2.7 889,426 - +1.6 889,426 - -1.7 889,426 - -0.7 890,047 + -0.7 890,047 + -1.1 890,047 + +1.6 890,047 + +1.9 890,047 + -1.7 890,048 - -1.2 890,048 - +1.1 890,048 - -0.1 890,048 - -2.2 890,058 + +1.1 890,059 - +1.2 890,104 + -1.5 890,104 + -3.1 890,105 - +1.3 890,105 - -1.4 890,191 - PFLU_RS03940 0.19 +1.6 890,307 + PFLU_RS03940 0.33 +0.7 890,307 + PFLU_RS03940 0.33 -2.8 890,307 + PFLU_RS03940 0.33 +1.3 890,308 - PFLU_RS03940 0.33 +1.9 890,308 - PFLU_RS03940 0.33 -0.9 890,326 + PFLU_RS03940 0.35 +0.0 890,326 + PFLU_RS03940 0.35 -1.3 890,326 + PFLU_RS03940 0.35 -0.7 890,326 + PFLU_RS03940 0.35 +1.2 890,326 + PFLU_RS03940 0.35 +1.1 890,327 - PFLU_RS03940 0.35 -0.8
Or see this region's nucleotide sequence