Experiment: Choline chloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS02685 and PFLU_RS02690 are separated by 46 nucleotides PFLU_RS02690 and PFLU_RS02695 are separated by 332 nucleotides PFLU_RS02695 and PFLU_RS02700 are separated by 195 nucleotides
PFLU_RS02685: PFLU_RS02685 - transglutaminase family protein, at 619,319 to 620,209
_RS02685
PFLU_RS02690: PFLU_RS02690 - hypothetical protein, at 620,256 to 620,444
_RS02690
PFLU_RS02695: PFLU_RS02695 - azurin, at 620,777 to 621,223
_RS02695
PFLU_RS02700: PFLU_RS02700 - ammonia-dependent NAD(+) synthetase, at 621,419 to 622,246
_RS02700
Position (kb) 620
621
622 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 619.855 kb on - strand, within PFLU_RS02685 at 619.855 kb on - strand, within PFLU_RS02685 at 619.855 kb on - strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.943 kb on + strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.944 kb on - strand, within PFLU_RS02685 at 619.955 kb on + strand, within PFLU_RS02685 at 619.955 kb on + strand, within PFLU_RS02685 at 620.030 kb on + strand, within PFLU_RS02685 at 620.030 kb on + strand, within PFLU_RS02685 at 620.030 kb on + strand, within PFLU_RS02685 at 620.030 kb on + strand, within PFLU_RS02685 at 620.031 kb on - strand, within PFLU_RS02685 at 620.031 kb on - strand, within PFLU_RS02685 at 620.031 kb on - strand, within PFLU_RS02685 at 620.031 kb on - strand, within PFLU_RS02685 at 620.031 kb on - strand, within PFLU_RS02685 at 620.207 kb on + strand at 620.257 kb on + strand at 620.257 kb on + strand at 620.258 kb on - strand at 620.298 kb on + strand, within PFLU_RS02690 at 620.298 kb on + strand, within PFLU_RS02690 at 620.299 kb on - strand, within PFLU_RS02690 at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.428 kb on + strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.429 kb on - strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.432 kb on + strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.433 kb on - strand at 620.456 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.506 kb on + strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.507 kb on - strand at 620.537 kb on + strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.549 kb on - strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.621 kb on + strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.622 kb on - strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.635 kb on + strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.636 kb on - strand at 620.669 kb on + strand at 620.682 kb on + strand at 620.683 kb on - strand at 620.706 kb on + strand at 620.706 kb on + strand at 620.707 kb on - strand at 620.707 kb on - strand at 620.714 kb on + strand at 620.715 kb on - strand at 620.715 kb on - strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.722 kb on + strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.723 kb on - strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.747 kb on + strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.748 kb on - strand at 620.754 kb on + strand at 620.754 kb on + strand at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.974 kb on + strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 620.975 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.044 kb on - strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.050 kb on + strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.051 kb on - strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.158 kb on + strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.159 kb on - strand, within PFLU_RS02695 at 621.217 kb on + strand at 621.218 kb on - strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.221 kb on + strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.222 kb on - strand at 621.388 kb on + strand at 621.389 kb on - strand at 621.389 kb on - strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.406 kb on + strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.407 kb on - strand at 621.462 kb on + strand at 621.462 kb on + strand at 621.463 kb on - strand at 621.463 kb on - strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.475 kb on + strand at 621.476 kb on - strand at 621.476 kb on - strand at 621.534 kb on + strand, within PFLU_RS02700 at 621.534 kb on + strand, within PFLU_RS02700 at 621.535 kb on - strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.786 kb on + strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 621.787 kb on - strand, within PFLU_RS02700 at 622.001 kb on - strand, within PFLU_RS02700
Per-strain Table
Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C) remove 619,855 - PFLU_RS02685 0.60 +0.9 619,855 - PFLU_RS02685 0.60 +0.8 619,855 - PFLU_RS02685 0.60 -1.1 619,943 + PFLU_RS02685 0.70 +3.6 619,943 + PFLU_RS02685 0.70 +2.4 619,943 + PFLU_RS02685 0.70 -1.0 619,943 + PFLU_RS02685 0.70 -1.5 619,943 + PFLU_RS02685 0.70 -1.0 619,943 + PFLU_RS02685 0.70 +0.8 619,944 - PFLU_RS02685 0.70 +1.0 619,944 - PFLU_RS02685 0.70 +1.6 619,944 - PFLU_RS02685 0.70 +1.0 619,944 - PFLU_RS02685 0.70 -0.3 619,944 - PFLU_RS02685 0.70 +1.0 619,944 - PFLU_RS02685 0.70 +1.7 619,955 + PFLU_RS02685 0.71 +1.7 619,955 + PFLU_RS02685 0.71 -1.4 620,030 + PFLU_RS02685 0.80 -1.0 620,030 + PFLU_RS02685 0.80 +1.0 620,030 + PFLU_RS02685 0.80 -0.0 620,030 + PFLU_RS02685 0.80 -2.3 620,031 - PFLU_RS02685 0.80 -1.0 620,031 - PFLU_RS02685 0.80 +1.0 620,031 - PFLU_RS02685 0.80 +2.7 620,031 - PFLU_RS02685 0.80 +1.2 620,031 - PFLU_RS02685 0.80 +1.2 620,207 + +0.7 620,257 + -1.6 620,257 + +0.7 620,258 - -1.2 620,298 + PFLU_RS02690 0.22 +0.4 620,298 + PFLU_RS02690 0.22 -2.5 620,299 - PFLU_RS02690 0.23 +1.3 620,428 + -1.2 620,428 + +1.0 620,428 + -1.5 620,428 + -0.0 620,428 + -1.6 620,428 + -0.8 620,428 + -1.0 620,428 + -1.3 620,428 + -3.3 620,428 + -0.8 620,429 - +0.8 620,429 - +0.9 620,429 - -0.9 620,429 - +1.3 620,429 - +0.8 620,429 - -0.1 620,429 - +1.5 620,429 - +0.5 620,429 - -2.2 620,429 - +1.8 620,429 - +0.9 620,432 + +0.4 620,432 + +1.3 620,432 + -2.2 620,432 + +0.8 620,432 + -2.7 620,432 + -0.2 620,433 - +0.1 620,433 - -0.3 620,433 - +0.2 620,433 - -0.7 620,433 - +1.5 620,433 - +2.6 620,456 + +0.8 620,506 + -1.2 620,506 + -1.8 620,506 + +1.7 620,507 - -0.0 620,507 - +0.7 620,507 - -1.0 620,537 + -0.7 620,549 - +0.4 620,549 - +2.2 620,549 - -1.9 620,621 + -0.3 620,621 + +1.4 620,621 + +1.1 620,621 + -0.6 620,621 + +0.4 620,621 + +0.4 620,622 - -1.6 620,622 - +0.9 620,622 - +0.3 620,622 - -2.3 620,635 + +1.0 620,635 + -3.6 620,635 + +0.1 620,635 + -0.3 620,635 + +0.1 620,635 + -0.6 620,635 + +1.3 620,635 + -1.8 620,636 - -1.2 620,636 - -2.8 620,636 - -0.9 620,636 - -1.3 620,636 - +1.0 620,636 - -0.3 620,636 - -2.1 620,636 - -1.5 620,669 + -0.2 620,682 + +0.2 620,683 - -1.8 620,706 + -1.7 620,706 + -0.0 620,707 - -2.5 620,707 - +0.4 620,714 + -1.2 620,715 - -1.8 620,715 - +0.4 620,722 + -1.0 620,722 + -2.2 620,722 + +2.0 620,723 - +0.4 620,723 - +1.2 620,723 - -0.8 620,747 + -1.5 620,747 + -0.6 620,747 + -2.0 620,747 + -0.8 620,747 + +0.4 620,747 + -0.1 620,747 + -0.0 620,747 + +2.0 620,747 + -2.4 620,747 + +1.9 620,747 + +1.7 620,747 + +1.6 620,747 + -0.1 620,747 + -0.3 620,747 + +2.0 620,748 - +2.1 620,748 - -2.2 620,748 - -0.3 620,748 - -1.2 620,748 - -1.1 620,748 - +2.2 620,748 - +0.8 620,748 - +1.0 620,748 - -1.9 620,748 - +2.0 620,748 - -0.6 620,754 + -2.3 620,754 + +0.4 620,974 + PFLU_RS02695 0.44 +0.2 620,974 + PFLU_RS02695 0.44 +2.2 620,974 + PFLU_RS02695 0.44 -0.8 620,974 + PFLU_RS02695 0.44 -0.0 620,974 + PFLU_RS02695 0.44 +2.5 620,974 + PFLU_RS02695 0.44 +1.6 620,974 + PFLU_RS02695 0.44 +2.0 620,975 - PFLU_RS02695 0.44 +0.6 620,975 - PFLU_RS02695 0.44 +1.6 620,975 - PFLU_RS02695 0.44 +1.1 620,975 - PFLU_RS02695 0.44 +1.0 620,975 - PFLU_RS02695 0.44 -1.0 621,044 - PFLU_RS02695 0.60 -0.5 621,044 - PFLU_RS02695 0.60 +2.4 621,044 - PFLU_RS02695 0.60 -2.2 621,044 - PFLU_RS02695 0.60 -1.6 621,044 - PFLU_RS02695 0.60 +2.0 621,050 + PFLU_RS02695 0.61 -2.7 621,050 + PFLU_RS02695 0.61 -1.5 621,051 - PFLU_RS02695 0.61 +1.5 621,051 - PFLU_RS02695 0.61 +4.2 621,051 - PFLU_RS02695 0.61 +0.7 621,051 - PFLU_RS02695 0.61 +1.4 621,051 - PFLU_RS02695 0.61 +2.0 621,051 - PFLU_RS02695 0.61 -1.9 621,051 - PFLU_RS02695 0.61 -0.6 621,158 + PFLU_RS02695 0.85 +2.0 621,158 + PFLU_RS02695 0.85 -0.0 621,158 + PFLU_RS02695 0.85 +1.5 621,158 + PFLU_RS02695 0.85 -0.5 621,158 + PFLU_RS02695 0.85 +1.0 621,158 + PFLU_RS02695 0.85 -0.9 621,158 + PFLU_RS02695 0.85 -1.9 621,159 - PFLU_RS02695 0.85 +0.1 621,159 - PFLU_RS02695 0.85 +2.0 621,159 - PFLU_RS02695 0.85 +1.5 621,217 + +1.3 621,218 - +2.0 621,221 + -2.8 621,221 + +1.3 621,221 + +1.5 621,221 + -1.5 621,221 + +1.1 621,222 - +1.5 621,222 - -0.0 621,222 - -0.8 621,222 - -0.1 621,222 - +0.4 621,222 - +1.0 621,222 - +1.6 621,222 - -0.1 621,388 + +1.6 621,389 - -2.2 621,389 - -1.3 621,406 + -0.6 621,406 + -1.2 621,406 + +0.7 621,407 - -0.6 621,407 - -1.7 621,407 - +1.1 621,462 + -2.3 621,462 + -1.2 621,463 - +2.0 621,463 - +0.4 621,475 + -2.8 621,475 + +1.4 621,475 + -1.6 621,476 - -0.0 621,476 - -1.3 621,534 + PFLU_RS02700 0.14 -1.2 621,534 + PFLU_RS02700 0.14 -0.0 621,535 - PFLU_RS02700 0.14 +2.0 621,786 + PFLU_RS02700 0.44 -2.1 621,786 + PFLU_RS02700 0.44 -1.6 621,786 + PFLU_RS02700 0.44 -0.3 621,787 - PFLU_RS02700 0.44 -0.5 621,787 - PFLU_RS02700 0.44 -0.0 621,787 - PFLU_RS02700 0.44 +1.0 621,787 - PFLU_RS02700 0.44 -1.7 621,787 - PFLU_RS02700 0.44 -0.6 621,787 - PFLU_RS02700 0.44 -0.0 621,787 - PFLU_RS02700 0.44 +1.0 621,787 - PFLU_RS02700 0.44 -0.0 621,787 - PFLU_RS02700 0.44 +1.7 622,001 - PFLU_RS02700 0.70 +0.2
Or see this region's nucleotide sequence