Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS01245

Experiment: Choline chloride 10 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS01240 and PFLU_RS01245 are separated by 115 nucleotidesPFLU_RS01245 and PFLU_RS01250 are separated by 11 nucleotidesPFLU_RS01250 and PFLU_RS01255 overlap by 4 nucleotides PFLU_RS01240: PFLU_RS01240 - L-glyceraldehyde 3-phosphate reductase, at 275,835 to 276,872 _RS01240 PFLU_RS01245: PFLU_RS01245 - taurine dioxygenase, at 276,988 to 277,824 _RS01245 PFLU_RS01250: PFLU_RS01250 - taurine ABC transporter permease TauC, at 277,836 to 278,672 _RS01250 PFLU_RS01255: PFLU_RS01255 - taurine ABC transporter ATP-binding subunit, at 278,669 to 279,448 _RS01255 Position (kb) 276 277 278Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 276.030 kb on + strand, within PFLU_RS01240at 276.030 kb on + strand, within PFLU_RS01240at 276.031 kb on - strand, within PFLU_RS01240at 276.031 kb on - strand, within PFLU_RS01240at 276.031 kb on - strand, within PFLU_RS01240at 276.096 kb on + strand, within PFLU_RS01240at 276.180 kb on + strand, within PFLU_RS01240at 276.180 kb on + strand, within PFLU_RS01240at 276.180 kb on + strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.181 kb on - strand, within PFLU_RS01240at 276.228 kb on + strand, within PFLU_RS01240at 276.228 kb on + strand, within PFLU_RS01240at 276.228 kb on + strand, within PFLU_RS01240at 276.228 kb on + strand, within PFLU_RS01240at 276.228 kb on + strand, within PFLU_RS01240at 276.229 kb on - strand, within PFLU_RS01240at 276.229 kb on - strand, within PFLU_RS01240at 276.229 kb on - strand, within PFLU_RS01240at 276.237 kb on - strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.327 kb on + strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.328 kb on - strand, within PFLU_RS01240at 276.335 kb on + strand, within PFLU_RS01240at 276.335 kb on + strand, within PFLU_RS01240at 276.335 kb on + strand, within PFLU_RS01240at 276.336 kb on - strand, within PFLU_RS01240at 276.346 kb on - strand, within PFLU_RS01240at 276.423 kb on + strand, within PFLU_RS01240at 276.423 kb on + strand, within PFLU_RS01240at 276.423 kb on + strand, within PFLU_RS01240at 276.423 kb on + strand, within PFLU_RS01240at 276.423 kb on + strand, within PFLU_RS01240at 276.424 kb on - strand, within PFLU_RS01240at 276.424 kb on - strand, within PFLU_RS01240at 276.534 kb on + strand, within PFLU_RS01240at 276.534 kb on + strand, within PFLU_RS01240at 276.535 kb on - strand, within PFLU_RS01240at 276.535 kb on - strand, within PFLU_RS01240at 276.535 kb on - strand, within PFLU_RS01240at 276.535 kb on - strand, within PFLU_RS01240at 276.535 kb on - strand, within PFLU_RS01240at 276.753 kb on - strand, within PFLU_RS01240at 276.910 kb on + strandat 276.910 kb on + strandat 276.977 kb on + strandat 276.977 kb on + strandat 276.989 kb on + strandat 276.989 kb on + strandat 276.989 kb on + strandat 276.990 kb on - strandat 276.990 kb on - strandat 277.061 kb on + strandat 277.061 kb on + strandat 277.062 kb on - strandat 277.257 kb on + strand, within PFLU_RS01245at 277.257 kb on + strand, within PFLU_RS01245at 277.257 kb on + strand, within PFLU_RS01245at 277.257 kb on + strand, within PFLU_RS01245at 277.258 kb on - strand, within PFLU_RS01245at 277.258 kb on - strand, within PFLU_RS01245at 277.425 kb on - strand, within PFLU_RS01245at 277.425 kb on - strand, within PFLU_RS01245at 277.425 kb on - strand, within PFLU_RS01245at 277.425 kb on - strand, within PFLU_RS01245at 277.601 kb on - strand, within PFLU_RS01245at 277.611 kb on - strand, within PFLU_RS01245at 277.611 kb on - strand, within PFLU_RS01245at 277.624 kb on - strand, within PFLU_RS01245at 277.696 kb on + strand, within PFLU_RS01245at 277.697 kb on - strand, within PFLU_RS01245at 277.794 kb on + strandat 277.795 kb on - strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.798 kb on + strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 277.799 kb on - strandat 278.055 kb on + strand, within PFLU_RS01250at 278.055 kb on + strand, within PFLU_RS01250at 278.055 kb on + strand, within PFLU_RS01250at 278.056 kb on - strand, within PFLU_RS01250at 278.056 kb on - strand, within PFLU_RS01250at 278.215 kb on + strand, within PFLU_RS01250at 278.215 kb on + strand, within PFLU_RS01250at 278.215 kb on + strand, within PFLU_RS01250at 278.216 kb on - strand, within PFLU_RS01250at 278.216 kb on - strand, within PFLU_RS01250at 278.275 kb on + strand, within PFLU_RS01250at 278.276 kb on - strand, within PFLU_RS01250at 278.276 kb on - strand, within PFLU_RS01250at 278.276 kb on - strand, within PFLU_RS01250at 278.300 kb on - strand, within PFLU_RS01250at 278.300 kb on - strand, within PFLU_RS01250at 278.300 kb on - strand, within PFLU_RS01250at 278.511 kb on + strand, within PFLU_RS01250at 278.511 kb on + strand, within PFLU_RS01250at 278.511 kb on + strand, within PFLU_RS01250at 278.512 kb on - strand, within PFLU_RS01250at 278.512 kb on - strand, within PFLU_RS01250at 278.512 kb on - strand, within PFLU_RS01250at 278.594 kb on + strandat 278.594 kb on + strandat 278.595 kb on - strandat 278.595 kb on - strandat 278.662 kb on + strandat 278.662 kb on + strandat 278.663 kb on - strandat 278.663 kb on - strandat 278.663 kb on - strandat 278.701 kb on + strandat 278.701 kb on + strandat 278.701 kb on + strandat 278.702 kb on - strandat 278.702 kb on - strandat 278.798 kb on + strand, within PFLU_RS01255at 278.798 kb on + strand, within PFLU_RS01255at 278.799 kb on - strand, within PFLU_RS01255at 278.799 kb on - strand, within PFLU_RS01255

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Choline chloride 10 mM (C)
remove
276,030 + PFLU_RS01240 0.19 +0.9
276,030 + PFLU_RS01240 0.19 -1.0
276,031 - PFLU_RS01240 0.19 +1.0
276,031 - PFLU_RS01240 0.19 +0.5
276,031 - PFLU_RS01240 0.19 +0.7
276,096 + PFLU_RS01240 0.25 +1.0
276,180 + PFLU_RS01240 0.33 +0.3
276,180 + PFLU_RS01240 0.33 -0.1
276,180 + PFLU_RS01240 0.33 +0.3
276,181 - PFLU_RS01240 0.33 -0.3
276,181 - PFLU_RS01240 0.33 -1.1
276,181 - PFLU_RS01240 0.33 -0.5
276,181 - PFLU_RS01240 0.33 -3.5
276,181 - PFLU_RS01240 0.33 -3.0
276,181 - PFLU_RS01240 0.33 -2.0
276,228 + PFLU_RS01240 0.38 +2.0
276,228 + PFLU_RS01240 0.38 -0.7
276,228 + PFLU_RS01240 0.38 +0.3
276,228 + PFLU_RS01240 0.38 -0.5
276,228 + PFLU_RS01240 0.38 -1.0
276,229 - PFLU_RS01240 0.38 -1.1
276,229 - PFLU_RS01240 0.38 +0.0
276,229 - PFLU_RS01240 0.38 +0.2
276,237 - PFLU_RS01240 0.39 -0.8
276,327 + PFLU_RS01240 0.47 +0.9
276,327 + PFLU_RS01240 0.47 -0.1
276,327 + PFLU_RS01240 0.47 +2.0
276,327 + PFLU_RS01240 0.47 -2.5
276,327 + PFLU_RS01240 0.47 -1.0
276,327 + PFLU_RS01240 0.47 -0.3
276,327 + PFLU_RS01240 0.47 -2.5
276,328 - PFLU_RS01240 0.47 +0.1
276,328 - PFLU_RS01240 0.47 +2.7
276,328 - PFLU_RS01240 0.47 +0.5
276,328 - PFLU_RS01240 0.47 -1.3
276,328 - PFLU_RS01240 0.47 +1.5
276,328 - PFLU_RS01240 0.47 -2.0
276,328 - PFLU_RS01240 0.47 +1.7
276,328 - PFLU_RS01240 0.47 +0.4
276,328 - PFLU_RS01240 0.47 -0.3
276,328 - PFLU_RS01240 0.47 +0.8
276,328 - PFLU_RS01240 0.47 -1.4
276,328 - PFLU_RS01240 0.47 -1.9
276,328 - PFLU_RS01240 0.47 -2.2
276,335 + PFLU_RS01240 0.48 -0.3
276,335 + PFLU_RS01240 0.48 +1.3
276,335 + PFLU_RS01240 0.48 -1.3
276,336 - PFLU_RS01240 0.48 +2.8
276,346 - PFLU_RS01240 0.49 -2.5
276,423 + PFLU_RS01240 0.57 +2.9
276,423 + PFLU_RS01240 0.57 -0.3
276,423 + PFLU_RS01240 0.57 +0.9
276,423 + PFLU_RS01240 0.57 -1.0
276,423 + PFLU_RS01240 0.57 -1.1
276,424 - PFLU_RS01240 0.57 +1.0
276,424 - PFLU_RS01240 0.57 +0.5
276,534 + PFLU_RS01240 0.67 +1.2
276,534 + PFLU_RS01240 0.67 +2.4
276,535 - PFLU_RS01240 0.67 -0.5
276,535 - PFLU_RS01240 0.67 +1.6
276,535 - PFLU_RS01240 0.67 -1.1
276,535 - PFLU_RS01240 0.67 +1.9
276,535 - PFLU_RS01240 0.67 +1.4
276,753 - PFLU_RS01240 0.88 +1.7
276,910 + -0.1
276,910 + +0.3
276,977 + -1.3
276,977 + +0.9
276,989 + -2.6
276,989 + -1.4
276,989 + -2.0
276,990 - +0.7
276,990 - +1.3
277,061 + -0.4
277,061 + -1.8
277,062 - -1.7
277,257 + PFLU_RS01245 0.32 +0.2
277,257 + PFLU_RS01245 0.32 +2.0
277,257 + PFLU_RS01245 0.32 -2.3
277,257 + PFLU_RS01245 0.32 +0.8
277,258 - PFLU_RS01245 0.32 +1.0
277,258 - PFLU_RS01245 0.32 -2.3
277,425 - PFLU_RS01245 0.52 +3.0
277,425 - PFLU_RS01245 0.52 +1.6
277,425 - PFLU_RS01245 0.52 +1.7
277,425 - PFLU_RS01245 0.52 -0.8
277,601 - PFLU_RS01245 0.73 -0.6
277,611 - PFLU_RS01245 0.74 +1.9
277,611 - PFLU_RS01245 0.74 +1.1
277,624 - PFLU_RS01245 0.76 +1.4
277,696 + PFLU_RS01245 0.85 -0.8
277,697 - PFLU_RS01245 0.85 -1.1
277,794 + -2.0
277,795 - -2.3
277,798 + -0.3
277,798 + -1.5
277,798 + +1.2
277,798 + +1.0
277,798 + +0.9
277,798 + -0.5
277,798 + +1.8
277,798 + +0.9
277,799 - +2.9
277,799 - +2.5
277,799 - +1.5
277,799 - -2.8
277,799 - +0.2
277,799 - +0.3
277,799 - -2.7
277,799 - -0.5
278,055 + PFLU_RS01250 0.26 -0.2
278,055 + PFLU_RS01250 0.26 -1.8
278,055 + PFLU_RS01250 0.26 -1.7
278,056 - PFLU_RS01250 0.26 -0.2
278,056 - PFLU_RS01250 0.26 -1.0
278,215 + PFLU_RS01250 0.45 +0.4
278,215 + PFLU_RS01250 0.45 -2.9
278,215 + PFLU_RS01250 0.45 -1.4
278,216 - PFLU_RS01250 0.45 +0.6
278,216 - PFLU_RS01250 0.45 +0.1
278,275 + PFLU_RS01250 0.52 -2.1
278,276 - PFLU_RS01250 0.53 -2.0
278,276 - PFLU_RS01250 0.53 -2.9
278,276 - PFLU_RS01250 0.53 -0.9
278,300 - PFLU_RS01250 0.55 -1.0
278,300 - PFLU_RS01250 0.55 -0.1
278,300 - PFLU_RS01250 0.55 +1.4
278,511 + PFLU_RS01250 0.81 +4.0
278,511 + PFLU_RS01250 0.81 -2.8
278,511 + PFLU_RS01250 0.81 +1.8
278,512 - PFLU_RS01250 0.81 -0.2
278,512 - PFLU_RS01250 0.81 +1.7
278,512 - PFLU_RS01250 0.81 -1.8
278,594 + -1.9
278,594 + +1.5
278,595 - +1.7
278,595 - +0.9
278,662 + +0.0
278,662 + -2.2
278,663 - -1.3
278,663 - +1.0
278,663 - -0.5
278,701 + -1.1
278,701 + +1.4
278,701 + -2.0
278,702 - -1.1
278,702 - +2.0
278,798 + PFLU_RS01255 0.17 +1.5
278,798 + PFLU_RS01255 0.17 -0.4
278,799 - PFLU_RS01255 0.17 +1.5
278,799 - PFLU_RS01255 0.17 -0.8

Or see this region's nucleotide sequence