Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS28255 and BPHYT_RS28260 are separated by 120 nucleotides BPHYT_RS28260 and BPHYT_RS28265 are separated by 19 nucleotides BPHYT_RS28265 and BPHYT_RS28270 are separated by 33 nucleotides
BPHYT_RS28255: BPHYT_RS28255 - hypothetical protein, at 1,896,824 to 1,897,033
_RS28255
BPHYT_RS28260: BPHYT_RS28260 - oxidoreductase, at 1,897,154 to 1,897,852
_RS28260
BPHYT_RS28265: BPHYT_RS28265 - hypothetical protein, at 1,897,872 to 1,898,879
_RS28265
BPHYT_RS28270: BPHYT_RS28270 - ABC transporter substrate-binding protein, at 1,898,913 to 1,900,034
_RS28270
Position (kb) 1897
1898
1899 Strain fitness (log2 ratio) -2
-1
0
1 at 1896.897 kb on + strand, within BPHYT_RS28255 at 1897.397 kb on + strand, within BPHYT_RS28260 at 1897.663 kb on + strand, within BPHYT_RS28260 at 1897.697 kb on - strand, within BPHYT_RS28260 at 1898.209 kb on + strand, within BPHYT_RS28265 at 1898.377 kb on - strand, within BPHYT_RS28265 at 1898.377 kb on - strand, within BPHYT_RS28265 at 1898.377 kb on - strand, within BPHYT_RS28265 at 1898.618 kb on + strand, within BPHYT_RS28265 at 1898.621 kb on - strand, within BPHYT_RS28265 at 1898.621 kb on - strand, within BPHYT_RS28265 at 1898.696 kb on + strand, within BPHYT_RS28265 at 1898.923 kb on + strand at 1898.953 kb on + strand at 1898.954 kb on - strand at 1899.002 kb on - strand at 1899.002 kb on - strand at 1899.116 kb on - strand, within BPHYT_RS28270 at 1899.226 kb on + strand, within BPHYT_RS28270 at 1899.691 kb on + strand, within BPHYT_RS28270 at 1899.728 kb on - strand, within BPHYT_RS28270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 1,896,897 + BPHYT_RS28255 0.35 -0.1 1,897,397 + BPHYT_RS28260 0.35 -0.2 1,897,663 + BPHYT_RS28260 0.73 +0.6 1,897,697 - BPHYT_RS28260 0.78 +1.0 1,898,209 + BPHYT_RS28265 0.33 +0.3 1,898,377 - BPHYT_RS28265 0.50 +0.7 1,898,377 - BPHYT_RS28265 0.50 -1.9 1,898,377 - BPHYT_RS28265 0.50 +0.1 1,898,618 + BPHYT_RS28265 0.74 +0.4 1,898,621 - BPHYT_RS28265 0.74 +0.0 1,898,621 - BPHYT_RS28265 0.74 +0.8 1,898,696 + BPHYT_RS28265 0.82 -1.2 1,898,923 + +0.5 1,898,953 + +0.3 1,898,954 - -0.1 1,899,002 - +1.6 1,899,002 - -1.3 1,899,116 - BPHYT_RS28270 0.18 -1.1 1,899,226 + BPHYT_RS28270 0.28 -0.5 1,899,691 + BPHYT_RS28270 0.69 +1.1 1,899,728 - BPHYT_RS28270 0.73 -1.1
Or see this region's nucleotide sequence