Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27690

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27685 and BPHYT_RS27690 are separated by 9 nucleotidesBPHYT_RS27690 and BPHYT_RS27695 are separated by 81 nucleotides BPHYT_RS27685: BPHYT_RS27685 - ornithine carbamoyltransferase, at 1,777,157 to 1,778,155 _RS27685 BPHYT_RS27690: BPHYT_RS27690 - carbamate kinase, at 1,778,165 to 1,779,073 _RS27690 BPHYT_RS27695: BPHYT_RS27695 - bifunctional enoyl-CoA hydratase/phosphate acetyltransferase, at 1,779,155 to 1,780,558 _RS27695 Position (kb) 1778 1779 1780Strain fitness (log2 ratio) -2 -1 0 1 2at 1777.263 kb on - strand, within BPHYT_RS27685at 1777.386 kb on - strand, within BPHYT_RS27685at 1777.637 kb on + strand, within BPHYT_RS27685at 1777.845 kb on - strand, within BPHYT_RS27685at 1778.023 kb on - strand, within BPHYT_RS27685at 1778.120 kb on - strandat 1778.549 kb on + strand, within BPHYT_RS27690at 1778.785 kb on + strand, within BPHYT_RS27690at 1779.079 kb on + strandat 1779.079 kb on + strandat 1779.408 kb on - strand, within BPHYT_RS27695at 1779.408 kb on - strand, within BPHYT_RS27695at 1779.408 kb on - strand, within BPHYT_RS27695

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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1,777,263 - BPHYT_RS27685 0.11 +2.2
1,777,386 - BPHYT_RS27685 0.23 -0.7
1,777,637 + BPHYT_RS27685 0.48 -0.0
1,777,845 - BPHYT_RS27685 0.69 -0.5
1,778,023 - BPHYT_RS27685 0.87 +0.6
1,778,120 - +1.2
1,778,549 + BPHYT_RS27690 0.42 -0.1
1,778,785 + BPHYT_RS27690 0.68 +1.1
1,779,079 + -1.0
1,779,079 + +0.5
1,779,408 - BPHYT_RS27695 0.18 -2.0
1,779,408 - BPHYT_RS27695 0.18 -1.1
1,779,408 - BPHYT_RS27695 0.18 -0.1

Or see this region's nucleotide sequence