Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23180

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23175 and BPHYT_RS23180 are separated by 21 nucleotidesBPHYT_RS23180 and BPHYT_RS23185 are separated by 41 nucleotides BPHYT_RS23175: BPHYT_RS23175 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase, at 765,909 to 767,402 _RS23175 BPHYT_RS23180: BPHYT_RS23180 - hypothetical protein, at 767,424 to 767,609 _RS23180 BPHYT_RS23185: BPHYT_RS23185 - MFS transporter, at 767,651 to 768,847 _RS23185 Position (kb) 767 768Strain fitness (log2 ratio) -1 0 1at 766.668 kb on + strand, within BPHYT_RS23175at 766.892 kb on + strand, within BPHYT_RS23175at 767.365 kb on - strandat 767.756 kb on - strandat 767.884 kb on - strand, within BPHYT_RS23185at 768.197 kb on + strand, within BPHYT_RS23185at 768.477 kb on + strand, within BPHYT_RS23185

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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766,668 + BPHYT_RS23175 0.51 -0.0
766,892 + BPHYT_RS23175 0.66 +0.4
767,365 - +0.5
767,756 - +0.5
767,884 - BPHYT_RS23185 0.19 +0.4
768,197 + BPHYT_RS23185 0.46 -0.8
768,477 + BPHYT_RS23185 0.69 +0.4

Or see this region's nucleotide sequence