Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS19520 and BPHYT_RS19525 are separated by 94 nucleotides BPHYT_RS19525 and BPHYT_RS19530 are separated by 105 nucleotides BPHYT_RS19530 and BPHYT_RS19535 are separated by 239 nucleotides BPHYT_RS19535 and BPHYT_RS19540 are separated by 134 nucleotides
BPHYT_RS19520: BPHYT_RS19520 - phenylalanine 4-monooxygenase, at 4,392,660 to 4,393,550
_RS19520
BPHYT_RS19525: BPHYT_RS19525 - pterin-4-alpha-carbinolamine dehydratase, at 4,393,645 to 4,393,935
_RS19525
BPHYT_RS19530: BPHYT_RS19530 - hypothetical protein, at 4,394,041 to 4,394,265
_RS19530
BPHYT_RS19535: BPHYT_RS19535 - XRE family transcriptional regulator, at 4,394,505 to 4,395,191
_RS19535
BPHYT_RS19540: BPHYT_RS19540 - sensor histidine kinase, at 4,395,326 to 4,396,831
_RS19540
Position (kb) 4394
4395
4396 Strain fitness (log2 ratio) -2
-1
0
1 at 4393.545 kb on - strand at 4393.837 kb on + strand, within BPHYT_RS19525 at 4393.924 kb on - strand at 4393.924 kb on - strand at 4393.934 kb on - strand at 4393.947 kb on + strand at 4393.948 kb on - strand at 4393.948 kb on - strand at 4394.017 kb on - strand at 4394.049 kb on + strand at 4394.050 kb on - strand at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.066 kb on + strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.067 kb on - strand, within BPHYT_RS19530 at 4394.131 kb on + strand, within BPHYT_RS19530 at 4394.132 kb on - strand, within BPHYT_RS19530 at 4394.148 kb on - strand, within BPHYT_RS19530 at 4394.479 kb on + strand at 4394.489 kb on + strand at 4394.796 kb on + strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4394.797 kb on - strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.090 kb on + strand, within BPHYT_RS19535 at 4395.091 kb on - strand, within BPHYT_RS19535 at 4395.107 kb on + strand, within BPHYT_RS19535 at 4395.190 kb on - strand at 4395.347 kb on - strand at 4395.422 kb on + strand at 4395.423 kb on - strand at 4395.440 kb on + strand at 4395.441 kb on - strand at 4395.501 kb on + strand, within BPHYT_RS19540 at 4395.502 kb on - strand, within BPHYT_RS19540 at 4395.584 kb on + strand, within BPHYT_RS19540 at 4395.585 kb on - strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.671 kb on + strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.672 kb on - strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.959 kb on + strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.960 kb on - strand, within BPHYT_RS19540 at 4395.964 kb on - strand, within BPHYT_RS19540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 4,393,545 - -1.2 4,393,837 + BPHYT_RS19525 0.66 +0.0 4,393,924 - +0.7 4,393,924 - +0.3 4,393,934 - -0.3 4,393,947 + -0.1 4,393,948 - +1.1 4,393,948 - +0.3 4,394,017 - +0.1 4,394,049 + +0.7 4,394,050 - -1.1 4,394,066 + BPHYT_RS19530 0.11 -0.4 4,394,066 + BPHYT_RS19530 0.11 -0.3 4,394,067 - BPHYT_RS19530 0.12 -0.7 4,394,067 - BPHYT_RS19530 0.12 -0.2 4,394,131 + BPHYT_RS19530 0.40 +0.1 4,394,132 - BPHYT_RS19530 0.40 +0.0 4,394,148 - BPHYT_RS19530 0.48 -1.5 4,394,479 + -2.1 4,394,489 + +0.4 4,394,796 + BPHYT_RS19535 0.42 -1.3 4,394,797 - BPHYT_RS19535 0.43 -0.0 4,394,797 - BPHYT_RS19535 0.43 -1.6 4,395,090 + BPHYT_RS19535 0.85 -1.6 4,395,090 + BPHYT_RS19535 0.85 -1.5 4,395,091 - BPHYT_RS19535 0.85 -0.8 4,395,107 + BPHYT_RS19535 0.88 -1.1 4,395,190 - -1.6 4,395,347 - -1.2 4,395,422 + -0.5 4,395,423 - -0.7 4,395,440 + -2.2 4,395,441 - -0.9 4,395,501 + BPHYT_RS19540 0.12 -2.3 4,395,502 - BPHYT_RS19540 0.12 -1.4 4,395,584 + BPHYT_RS19540 0.17 -0.9 4,395,585 - BPHYT_RS19540 0.17 -0.7 4,395,671 + BPHYT_RS19540 0.23 -0.7 4,395,671 + BPHYT_RS19540 0.23 +0.0 4,395,672 - BPHYT_RS19540 0.23 -1.6 4,395,672 - BPHYT_RS19540 0.23 -0.5 4,395,959 + BPHYT_RS19540 0.42 -0.6 4,395,959 + BPHYT_RS19540 0.42 -0.5 4,395,959 + BPHYT_RS19540 0.42 -1.7 4,395,960 - BPHYT_RS19540 0.42 -0.5 4,395,960 - BPHYT_RS19540 0.42 -0.7 4,395,960 - BPHYT_RS19540 0.42 -2.0 4,395,960 - BPHYT_RS19540 0.42 -2.3 4,395,960 - BPHYT_RS19540 0.42 -1.0 4,395,964 - BPHYT_RS19540 0.42 -0.4
Or see this region's nucleotide sequence