Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16435

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
3,724,834	-				+1.1
3,724,834	-				-0.2
3,724,893	+				+0.2
3,724,894	-				-0.4
3,724,958	-				-1.6
3,724,969	+				+2.4
3,724,969	+				+1.3
3,724,992	+				-0.5
3,724,992	+				+1.9
3,724,993	-				-0.3
3,724,993	-				-0.8
3,725,075	+				-2.1
3,725,076	-				-0.5
3,725,076	-				-2.0
3,725,143	+		BPHYT_RS16430	0.10	-3.1
3,725,144	-		BPHYT_RS16430	0.10	-2.9
3,725,144	-		BPHYT_RS16430	0.10	-2.7
3,725,144	-		BPHYT_RS16430	0.10	-1.6
3,725,145	+		BPHYT_RS16430	0.11	-0.9
3,725,146	-		BPHYT_RS16430	0.11	-1.9
3,725,184	+		BPHYT_RS16430	0.16	-0.7
3,725,212	-		BPHYT_RS16430	0.20	-2.5
3,725,254	+		BPHYT_RS16430	0.25	-0.5
3,725,254	+		BPHYT_RS16430	0.25	-2.2
3,725,254	+		BPHYT_RS16430	0.25	-1.7
3,725,254	+		BPHYT_RS16430	0.25	-2.3
3,725,254	+		BPHYT_RS16430	0.25	-2.0
3,725,255	-		BPHYT_RS16430	0.26	-2.5
3,725,255	-		BPHYT_RS16430	0.26	-1.6
3,725,255	-		BPHYT_RS16430	0.26	-2.8
3,725,287	+		BPHYT_RS16430	0.30	-2.0
3,725,288	-		BPHYT_RS16430	0.30	-1.7
3,725,293	+		BPHYT_RS16430	0.31	-3.2
3,725,293	+		BPHYT_RS16430	0.31	-3.4
3,725,294	-		BPHYT_RS16430	0.31	-2.2
3,725,294	-		BPHYT_RS16430	0.31	-0.8
3,725,294	-		BPHYT_RS16430	0.31	-2.5
3,725,294	-		BPHYT_RS16430	0.31	-0.5
3,725,294	-		BPHYT_RS16430	0.31	-2.3
3,725,294	-		BPHYT_RS16430	0.31	-1.3
3,725,347	+		BPHYT_RS16430	0.38	-1.4
3,725,348	-		BPHYT_RS16430	0.38	-1.7
3,725,359	+		BPHYT_RS16430	0.40	-0.6
3,725,359	+		BPHYT_RS16430	0.40	+0.2
3,725,359	+		BPHYT_RS16430	0.40	-1.1
3,725,359	+		BPHYT_RS16430	0.40	-2.4
3,725,360	-		BPHYT_RS16430	0.40	-3.3
3,725,360	-		BPHYT_RS16430	0.40	-0.6
3,725,374	+		BPHYT_RS16430	0.42	-1.4
3,725,374	+		BPHYT_RS16430	0.42	-2.1
3,725,374	+		BPHYT_RS16430	0.42	-2.2
3,725,375	-		BPHYT_RS16430	0.42	-2.5
3,725,375	-		BPHYT_RS16430	0.42	-2.2
3,725,375	-		BPHYT_RS16430	0.42	-0.4
3,725,395	+		BPHYT_RS16430	0.45	-2.9
3,725,395	+				+0.1
3,725,395	+		BPHYT_RS16430	0.45	-2.0
3,725,395	+		BPHYT_RS16430	0.45	-2.5
3,725,396	-		BPHYT_RS16430	0.45	-1.8
3,725,396	-		BPHYT_RS16430	0.45	-1.2
3,725,396	-				-1.5
3,725,548	-		BPHYT_RS16430	0.66	-1.7
3,725,590	+		BPHYT_RS16430	0.71	-1.6
3,725,590	+		BPHYT_RS16430	0.71	-2.0
3,725,591	-		BPHYT_RS16430	0.71	-3.4
3,725,591	-		BPHYT_RS16430	0.71	-2.6
3,725,797	+				-0.9
3,725,798	-				-1.8
3,725,912	+				-2.1
3,725,912	+				-1.5
3,725,912	+				-2.4
3,725,912	+				+1.1
3,725,913	-				-1.8
3,725,913	-				-1.2
3,725,913	-				-2.4
3,725,913	-				-1.8
3,725,913	-				-1.5
3,725,913	-				+0.1
3,725,913	-				-0.8
3,725,913	-				-2.5
3,725,913	-				-1.8
3,725,913	-				-1.7
3,725,913	-				-2.4
3,725,913	-				-0.9
3,725,916	+				-2.2
3,725,916	+				-2.1
3,725,916	+				-2.8
3,725,917	-				-0.5
3,726,001	-		BPHYT_RS16435	0.14	-1.4
3,726,107	-		BPHYT_RS16435	0.22	-1.6
3,726,139	+		BPHYT_RS16435	0.24	-3.2
3,726,184	+		BPHYT_RS16435	0.28	-3.1
3,726,208	+		BPHYT_RS16435	0.30	-2.0
3,726,208	+		BPHYT_RS16435	0.30	-1.6
3,726,208	+		BPHYT_RS16435	0.30	-2.1
3,726,209	-		BPHYT_RS16435	0.30	-3.7
3,726,209	-		BPHYT_RS16435	0.30	-2.3
3,726,244	+		BPHYT_RS16435	0.33	-1.6
3,726,244	+		BPHYT_RS16435	0.33	-0.9
3,726,244	+		BPHYT_RS16435	0.33	-1.5
3,726,244	+		BPHYT_RS16435	0.33	-2.2
3,726,244	+		BPHYT_RS16435	0.33	-2.3
3,726,250	+		BPHYT_RS16435	0.33	-1.2
3,726,250	+		BPHYT_RS16435	0.33	-2.2
3,726,251	-		BPHYT_RS16435	0.33	-1.9
3,726,251	-		BPHYT_RS16435	0.33	-2.8
3,726,367	+		BPHYT_RS16435	0.42	-0.4
3,726,367	+		BPHYT_RS16435	0.42	-1.4
3,726,526	+		BPHYT_RS16435	0.54	-2.2
3,726,670	+		BPHYT_RS16435	0.65	-1.8
3,726,670	+		BPHYT_RS16435	0.65	-0.4
3,726,670	+		BPHYT_RS16435	0.65	-0.9
3,726,670	+		BPHYT_RS16435	0.65	-2.5
3,726,670	+		BPHYT_RS16435	0.65	-2.7
3,726,670	+		BPHYT_RS16435	0.65	+0.3
3,726,671	-		BPHYT_RS16435	0.65	-2.2
3,726,671	-		BPHYT_RS16435	0.65	-2.8
3,726,671	-		BPHYT_RS16435	0.65	-2.8
3,726,706	+		BPHYT_RS16435	0.68	-2.6
3,726,706	+		BPHYT_RS16435	0.68	-2.6
3,726,707	-				+1.1
3,726,808	+		BPHYT_RS16435	0.76	-3.2
3,726,924	+		BPHYT_RS16435	0.85	-1.7
3,726,924	+		BPHYT_RS16435	0.85	-2.4
3,727,036	+				+0.3
3,727,036	+				-3.8
3,727,036	+				-1.2
3,727,036	+				-2.2
3,727,037	-				-2.0
3,727,037	-				-2.0
3,727,044	+				-2.1
3,727,044	+				+1.1
3,727,044	+				-2.8
3,727,045	-				-3.0
3,727,045	-				-1.2
3,727,045	-				-2.2
3,727,204	+				+1.6
3,727,208	+				-0.1
3,727,209	-				+0.1
3,727,306	+				-1.3
3,727,307	-				-0.1
3,727,335	-				+0.7
3,727,335	-				-0.5
3,727,343	+				+0.6
3,727,422	+		BPHYT_RS16440	0.17	+0.3
3,727,422	+		BPHYT_RS16440	0.17	-0.6
3,727,447	-		BPHYT_RS16440	0.21	-0.3
3,727,470	+		BPHYT_RS16440	0.25	-0.3
3,727,470	+		BPHYT_RS16440	0.25	-0.7
3,727,470	+		BPHYT_RS16440	0.25	+1.0
3,727,470	+		BPHYT_RS16440	0.25	+0.4
3,727,470	+		BPHYT_RS16440	0.25	+0.4
3,727,471	-		BPHYT_RS16440	0.25	-0.1
3,727,471	-		BPHYT_RS16440	0.25	+0.4
3,727,471	-		BPHYT_RS16440	0.25	-0.5
3,727,471	-		BPHYT_RS16440	0.25	-0.1
3,727,471	-		BPHYT_RS16440	0.25	-0.3
3,727,475	+		BPHYT_RS16440	0.26	-1.7
3,727,475	+		BPHYT_RS16440	0.26	-0.6
3,727,476	-		BPHYT_RS16440	0.26	-0.5
3,727,489	-		BPHYT_RS16440	0.28	+0.1
3,727,551	+		BPHYT_RS16440	0.38	-0.2
3,727,551	+		BPHYT_RS16440	0.38	-0.3
3,727,551	+		BPHYT_RS16440	0.38	+0.6
3,727,551	+		BPHYT_RS16440	0.38	-0.0
3,727,552	-		BPHYT_RS16440	0.38	+0.4
3,727,552	-		BPHYT_RS16440	0.38	+0.9
3,727,572	+		BPHYT_RS16440	0.42	-0.1
3,727,572	+		BPHYT_RS16440	0.42	-1.7
3,727,572	+		BPHYT_RS16440	0.42	-0.1
3,727,630	+		BPHYT_RS16440	0.51	+0.3
3,727,710	+		BPHYT_RS16440	0.64	+0.1
3,727,710	+		BPHYT_RS16440	0.64	-0.0
3,727,710	+		BPHYT_RS16440	0.64	+0.4
3,727,710	+		BPHYT_RS16440	0.64	+0.1
3,727,711	-		BPHYT_RS16440	0.64	-0.6
3,727,809	+		BPHYT_RS16440	0.80	-0.1
3,727,809	+		BPHYT_RS16440	0.80	-0.1
3,727,810	-		BPHYT_RS16440	0.80	-2.3
3,727,824	+		BPHYT_RS16440	0.82	-0.0
3,727,824	+		BPHYT_RS16440	0.82	-0.5
3,727,824	+		BPHYT_RS16440	0.82	+0.4
3,727,824	+		BPHYT_RS16440	0.82	-1.1
3,727,824	+		BPHYT_RS16440	0.82	+0.3
3,727,865	+		BPHYT_RS16440	0.89	-2.6
3,727,865	+		BPHYT_RS16440	0.89	+0.1
3,727,865	+		BPHYT_RS16440	0.89	-0.7
3,727,865	+		BPHYT_RS16440	0.89	-0.7
3,727,923	+				+0.4
3,727,960	+				-0.1
3,727,960	+				-0.4
3,727,961	-				+0.7
3,727,984	-				-1.7
3,728,092	+				-0.5
3,728,092	+				+1.0
3,728,093	-				+1.4