Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS15060 and BPHYT_RS15065 are separated by 146 nucleotides BPHYT_RS15065 and BPHYT_RS15070 are separated by 101 nucleotides
BPHYT_RS15060: BPHYT_RS15060 - MFS transporter, at 3,426,164 to 3,427,513
_RS15060
BPHYT_RS15065: BPHYT_RS15065 - GntR family transcriptional regulator, at 3,427,660 to 3,428,340
_RS15065
BPHYT_RS15070: BPHYT_RS15070 - amidase, at 3,428,442 to 3,429,821
_RS15070
Position (kb)
3427
3428
3429 Strain fitness (log2 ratio)
-2
-1
0
1 at 3426.901 kb on + strand, within BPHYT_RS15060 at 3426.954 kb on - strand, within BPHYT_RS15060 at 3427.065 kb on - strand, within BPHYT_RS15060 at 3427.111 kb on + strand, within BPHYT_RS15060 at 3427.136 kb on + strand, within BPHYT_RS15060 at 3427.136 kb on + strand, within BPHYT_RS15060 at 3427.137 kb on - strand, within BPHYT_RS15060 at 3427.233 kb on - strand, within BPHYT_RS15060 at 3427.233 kb on - strand, within BPHYT_RS15060 at 3427.349 kb on + strand, within BPHYT_RS15060 at 3427.349 kb on + strand, within BPHYT_RS15060 at 3427.350 kb on - strand, within BPHYT_RS15060 at 3427.350 kb on - strand, within BPHYT_RS15060 at 3427.361 kb on + strand, within BPHYT_RS15060 at 3427.450 kb on + strand at 3427.626 kb on - strand at 3427.735 kb on + strand, within BPHYT_RS15065 at 3427.735 kb on + strand, within BPHYT_RS15065 at 3427.735 kb on + strand, within BPHYT_RS15065 at 3427.970 kb on - strand, within BPHYT_RS15065 at 3428.012 kb on - strand, within BPHYT_RS15065 at 3428.012 kb on - strand, within BPHYT_RS15065 at 3428.222 kb on + strand, within BPHYT_RS15065 at 3428.223 kb on - strand, within BPHYT_RS15065 at 3428.393 kb on + strand at 3428.394 kb on - strand at 3428.394 kb on - strand at 3428.432 kb on + strand at 3428.511 kb on - strand at 3428.852 kb on - strand, within BPHYT_RS15070 at 3428.868 kb on + strand, within BPHYT_RS15070
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 3,426,901 + BPHYT_RS15060 0.55 -1.2 3,426,954 - BPHYT_RS15060 0.59 -1.1 3,427,065 - BPHYT_RS15060 0.67 -0.3 3,427,111 + BPHYT_RS15060 0.70 -0.4 3,427,136 + BPHYT_RS15060 0.72 -0.8 3,427,136 + BPHYT_RS15060 0.72 +1.0 3,427,137 - BPHYT_RS15060 0.72 +0.7 3,427,233 - BPHYT_RS15060 0.79 +0.9 3,427,233 - BPHYT_RS15060 0.79 -1.0 3,427,349 + BPHYT_RS15060 0.88 -1.4 3,427,349 + BPHYT_RS15060 0.88 -0.9 3,427,350 - BPHYT_RS15060 0.88 -1.8 3,427,350 - BPHYT_RS15060 0.88 -0.2 3,427,361 + BPHYT_RS15060 0.89 +0.3 3,427,450 + -0.3 3,427,626 - -2.0 3,427,735 + BPHYT_RS15065 0.11 +1.0 3,427,735 + BPHYT_RS15065 0.11 +0.2 3,427,735 + BPHYT_RS15065 0.11 +0.6 3,427,970 - BPHYT_RS15065 0.46 +0.3 3,428,012 - BPHYT_RS15065 0.52 +0.6 3,428,012 - BPHYT_RS15065 0.52 +1.1 3,428,222 + BPHYT_RS15065 0.83 +1.0 3,428,223 - BPHYT_RS15065 0.83 +0.8 3,428,393 + +0.5 3,428,394 - +0.5 3,428,394 - -0.6 3,428,432 + +0.4 3,428,511 - +0.4 3,428,852 - BPHYT_RS15070 0.30 -0.5 3,428,868 + BPHYT_RS15070 0.31 -0.1
Or see this region's nucleotide sequence