Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15065

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15060 and BPHYT_RS15065 are separated by 146 nucleotidesBPHYT_RS15065 and BPHYT_RS15070 are separated by 101 nucleotides BPHYT_RS15060: BPHYT_RS15060 - MFS transporter, at 3,426,164 to 3,427,513 _RS15060 BPHYT_RS15065: BPHYT_RS15065 - GntR family transcriptional regulator, at 3,427,660 to 3,428,340 _RS15065 BPHYT_RS15070: BPHYT_RS15070 - amidase, at 3,428,442 to 3,429,821 _RS15070 Position (kb) 3427 3428 3429Strain fitness (log2 ratio) -2 -1 0 1at 3426.901 kb on + strand, within BPHYT_RS15060at 3426.954 kb on - strand, within BPHYT_RS15060at 3427.065 kb on - strand, within BPHYT_RS15060at 3427.111 kb on + strand, within BPHYT_RS15060at 3427.136 kb on + strand, within BPHYT_RS15060at 3427.136 kb on + strand, within BPHYT_RS15060at 3427.137 kb on - strand, within BPHYT_RS15060at 3427.233 kb on - strand, within BPHYT_RS15060at 3427.233 kb on - strand, within BPHYT_RS15060at 3427.349 kb on + strand, within BPHYT_RS15060at 3427.349 kb on + strand, within BPHYT_RS15060at 3427.350 kb on - strand, within BPHYT_RS15060at 3427.350 kb on - strand, within BPHYT_RS15060at 3427.361 kb on + strand, within BPHYT_RS15060at 3427.450 kb on + strandat 3427.626 kb on - strandat 3427.735 kb on + strand, within BPHYT_RS15065at 3427.735 kb on + strand, within BPHYT_RS15065at 3427.735 kb on + strand, within BPHYT_RS15065at 3427.970 kb on - strand, within BPHYT_RS15065at 3428.012 kb on - strand, within BPHYT_RS15065at 3428.012 kb on - strand, within BPHYT_RS15065at 3428.222 kb on + strand, within BPHYT_RS15065at 3428.223 kb on - strand, within BPHYT_RS15065at 3428.393 kb on + strandat 3428.394 kb on - strandat 3428.394 kb on - strandat 3428.432 kb on + strandat 3428.511 kb on - strandat 3428.852 kb on - strand, within BPHYT_RS15070at 3428.868 kb on + strand, within BPHYT_RS15070

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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3,426,901 + BPHYT_RS15060 0.55 -1.2
3,426,954 - BPHYT_RS15060 0.59 -1.1
3,427,065 - BPHYT_RS15060 0.67 -0.3
3,427,111 + BPHYT_RS15060 0.70 -0.4
3,427,136 + BPHYT_RS15060 0.72 -0.8
3,427,136 + BPHYT_RS15060 0.72 +1.0
3,427,137 - BPHYT_RS15060 0.72 +0.7
3,427,233 - BPHYT_RS15060 0.79 +0.9
3,427,233 - BPHYT_RS15060 0.79 -1.0
3,427,349 + BPHYT_RS15060 0.88 -1.4
3,427,349 + BPHYT_RS15060 0.88 -0.9
3,427,350 - BPHYT_RS15060 0.88 -1.8
3,427,350 - BPHYT_RS15060 0.88 -0.2
3,427,361 + BPHYT_RS15060 0.89 +0.3
3,427,450 + -0.3
3,427,626 - -2.0
3,427,735 + BPHYT_RS15065 0.11 +1.0
3,427,735 + BPHYT_RS15065 0.11 +0.2
3,427,735 + BPHYT_RS15065 0.11 +0.6
3,427,970 - BPHYT_RS15065 0.46 +0.3
3,428,012 - BPHYT_RS15065 0.52 +0.6
3,428,012 - BPHYT_RS15065 0.52 +1.1
3,428,222 + BPHYT_RS15065 0.83 +1.0
3,428,223 - BPHYT_RS15065 0.83 +0.8
3,428,393 + +0.5
3,428,394 - +0.5
3,428,394 - -0.6
3,428,432 + +0.4
3,428,511 - +0.4
3,428,852 - BPHYT_RS15070 0.30 -0.5
3,428,868 + BPHYT_RS15070 0.31 -0.1

Or see this region's nucleotide sequence