Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12245

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS12240 and BPHYT_RS12245 are separated by 221 nucleotidesBPHYT_RS12245 and BPHYT_RS12250 are separated by 59 nucleotides BPHYT_RS12240: BPHYT_RS12240 - alanine racemase, at 2,795,435 to 2,796,505 _RS12240 BPHYT_RS12245: BPHYT_RS12245 - major facilitator transporter, at 2,796,727 to 2,798,034 _RS12245 BPHYT_RS12250: BPHYT_RS12250 - phosphomethylpyrimidine kinase, at 2,798,094 to 2,798,900 _RS12250 Position (kb) 2796 2797 2798 2799Strain fitness (log2 ratio) -1 0 1at 2798.917 kb on + strandat 2798.917 kb on + strandat 2798.918 kb on - strandat 2799.018 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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2,798,917 + +0.0
2,798,917 + +0.3
2,798,918 - -0.5
2,799,018 + -0.1

Or see this region's nucleotide sequence